RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 MYL1P05976 194 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 USP14P54578 494 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 SEMA3FQ13275 785 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 PFKFB3Q16875 520 aaPredicted RBP12.07□□□□□ -0.48
CCDC40-207ENST00000572253 ADGRA1Q86SQ6 560 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 JAKMIP2Q96AA8 810 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 CHP1Q99653 195 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 CRACR2AQ9BSW2 395 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 CRNKL1Q9BZJ0 848 aaKnown RBP12.07□□□□□ -0.48
CCDC40-207ENST00000572253 SUGCTQ9HAC7 445 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 DOCK2Q92608 1830 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 USP17L12C9JPN9 530 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 USP17L21D6R901 530 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 TRIM21P19474 475 aaKnown RBP12.07□□□□□ -0.48
CCDC40-207ENST00000572253 TRAPPC11Q7Z392 1133 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 BLIDQ8IZY5 108 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 SRBD1Q8N5C6 995 aaKnown RBP12.07□□□□□ -0.48
CCDC40-207ENST00000572253 SLC4A9Q96Q91 983 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 RIOK1Q9BRS2 568 aaKnown RBP12.07□□□□□ -0.48
CCDC40-207ENST00000572253 RRP15Q9Y3B9 282 aaKnown RBP12.07□□□□□ -0.48
CCDC40-207ENST00000572253 ANKRD36CQ5JPF3 1778 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 MYO1CO00159 1063 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 DYNLL1P63167 89 aaKnown RBP12.07□□□□□ -0.48
CCDC40-207ENST00000572253 C10orf67Q8IYJ2 551 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 ADSSL1Q8N142 457 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 DNAJC7Q99615 494 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 RNF216Q9NWF9 866 aaPredicted RBP12.07□□□□□ -0.48
CCDC40-207ENST00000572253 CAPN11Q9UMQ6 739 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 BCL9O00512 1426 aa12.07□□□□□ -0.48
CCDC40-207ENST00000572253 TSPY2A6NKD2 308 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 ORC4O43929 436 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 N4BP1O75113 896 aaKnown RBP12.06□□□□□ -0.48
CCDC40-207ENST00000572253 KCNB1Q14721 858 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 ANKRD18AQ8IVF6 992 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 RETREG2Q8NC44 543 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 TRIM34Q9BYJ4 488 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 DISC1Q9NRI5 854 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 CCDC87Q9NVE4 849 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 NIP7Q9Y221 180 aaKnown RBP eCLIP12.06□□□□□ -0.48
CCDC40-207ENST00000572253 EXOC5O00471 708 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 GYG1P46976 350 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 UBE4AQ14139 1066 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 NPY5RQ15761 445 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 AFAP1L1Q8TED9 768 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 BICDL2A1A5D9 508 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 TARSL2A2RTX5 802 aaKnown RBP12.06□□□□□ -0.48
CCDC40-207ENST00000572253 RNF225M0QZC1 329 aaPredicted RBP12.06□□□□□ -0.48
CCDC40-207ENST00000572253 ABL1P00519 1130 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 KAT14Q9H8E8 782 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 DISP2A7MBM2 1401 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 TOGARAM1Q9Y4F4 1720 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 BCL9LQ86UU0 1499 aa12.06□□□□□ -0.48
CCDC40-207ENST00000572253 ENC1O14682 589 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 TFRCP02786 760 aaKnown RBP12.05□□□□□ -0.48
CCDC40-207ENST00000572253 SPA17Q15506 151 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 CTR9Q6PD62 1173 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 SRLQ86TD4 932 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 CAPZA3Q96KX2 299 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 FAM204AQ9H8W3 233 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 EXOC1Q9NV70 894 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 RPS6KA5O75582 802 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 FGRP09769 529 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 PPP1R2P41236 205 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 GNAQP50148 359 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 FKBP15Q5T1M5 1219 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 CCDC170Q8IYT3 715 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 SMARCC1Q92922 1105 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-207ENST00000572253 TSGA10Q9BZW7 698 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 SH3GLB2Q9NR46 395 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 PDS5AQ29RF7 1337 aaKnown RBP12.05□□□□□ -0.48
CCDC40-207ENST00000572253 TRIM49BA6NDI0 452 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 RNF40O75150 1001 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 MTIF2P46199 727 aaKnown RBP12.05□□□□□ -0.48
CCDC40-207ENST00000572253 TBC1D8BQ0IIM8 1120 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 KIF5AQ12840 1032 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 TMED8Q6PL24 325 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-207ENST00000572253 CSGALNACT2Q8N6G5 542 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 DHTKD1Q96HY7 919 aaPredicted RBP12.05□□□□□ -0.48
CCDC40-207ENST00000572253 MTRQ99707 1265 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 TRIM10Q9UDY6 481 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 PCDHA4Q9UN74 947 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 ZNF804BA4D1E1 1349 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 SHANK3Q9BYB0 1731 aa12.05□□□□□ -0.48
CCDC40-207ENST00000572253 NUP98P52948 1817 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 ANO9A1A5B4 782 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 USO1O60763 962 aaKnown RBP12.04□□□□□ -0.48
CCDC40-207ENST00000572253 GTF2E1P29083 439 aaPredicted RBP12.04□□□□□ -0.48
CCDC40-207ENST00000572253 PAPD7Q5XG87 772 aaKnown RBP12.04□□□□□ -0.48
CCDC40-207ENST00000572253 MAGEF1Q9HAY2 307 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 SLAIN2Q9P270 581 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 ZNF652Q9Y2D9 606 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 REXO2Q9Y3B8 237 aaKnown RBP12.04□□□□□ -0.48
CCDC40-207ENST00000572253 MYH8P13535 1937 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 LRRIQ3A6PVS8 624 aaPredicted RBP12.04□□□□□ -0.48
CCDC40-207ENST00000572253 FAM47AQ5JRC9 791 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 ZNF662Q6ZS27 426 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 ZBTB9Q96C00 473 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 IQCDQ96DY2 449 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 JADE2Q9NQC1 790 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 TCP11L1Q9NUJ3 509 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms