RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 CCSAPQ6IQ19 270 aaPredicted RBP23.06■■□□□ 1.28
NUP88-203ENST00000572019 RPAP2Q8IXW5 612 aaPredicted RBP23.06■■□□□ 1.28
NUP88-203ENST00000572019 KLHDC9Q8NEP7 349 aa23.06■■□□□ 1.28
NUP88-203ENST00000572019 FGD4Q96M96 766 aa23.06■■□□□ 1.28
NUP88-203ENST00000572019 GOPCQ9HD26 462 aa23.06■■□□□ 1.28
NUP88-203ENST00000572019 TMEM39AQ9NV64 488 aa23.06■■□□□ 1.28
NUP88-203ENST00000572019 GBF1Q92538 1859 aa23.05■■□□□ 1.28
NUP88-203ENST00000572019 DNAJC25-GNG10A0A024R161 153 aa23.05■■□□□ 1.28
NUP88-203ENST00000572019 SMARCA5O60264 1052 aaPredicted RBP23.05■■□□□ 1.28
NUP88-203ENST00000572019 RASA1P20936 1047 aa23.05■■□□□ 1.28
NUP88-203ENST00000572019 NDUFB10O96000 172 aa23.04■■□□□ 1.28
NUP88-203ENST00000572019 FPGSQ05932 587 aa23.04■■□□□ 1.28
NUP88-203ENST00000572019 KCNA10Q16322 511 aa23.04■■□□□ 1.28
NUP88-203ENST00000572019 SNRNP48Q6IEG0 339 aaKnown RBP23.04■■□□□ 1.28
NUP88-203ENST00000572019 ANKRD33Q7Z3H0 272 aa23.04■■□□□ 1.28
NUP88-203ENST00000572019 SLF1Q9BQI6 1058 aa23.04■■□□□ 1.28
NUP88-203ENST00000572019 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.04■■□□□ 1.28
NUP88-203ENST00000572019 RAB11FIP3O75154 756 aa23.03■■□□□ 1.28
NUP88-203ENST00000572019 SLC4A3P48751 1232 aa23.03■■□□□ 1.28
NUP88-203ENST00000572019 C16orf59Q7L2K0 433 aa23.03■■□□□ 1.28
NUP88-203ENST00000572019 STARD7Q9NQZ5 370 aa23.03■■□□□ 1.28
NUP88-203ENST00000572019 ZHX1Q9UKY1 873 aaPredicted RBP23.03■■□□□ 1.28
NUP88-203ENST00000572019 TBX21Q9UL17 535 aa23.03■■□□□ 1.28
NUP88-203ENST00000572019 CNPY2Q9Y2B0 182 aa23.03■■□□□ 1.28
NUP88-203ENST00000572019 DNAJB2P25686 324 aa23.02■■□□□ 1.28
NUP88-203ENST00000572019 MIER1Q8N108 512 aa23.02■■□□□ 1.28
NUP88-203ENST00000572019 STRBPQ96SI9 672 aaKnown RBP23.02■■□□□ 1.28
NUP88-203ENST00000572019 BUD13Q9BRD0 619 aaKnown RBP eCLIP23.02■■□□□ 1.28
NUP88-203ENST00000572019 TEX13BQ9BXU2 312 aa23.02■■□□□ 1.28
NUP88-203ENST00000572019 PRDM6Q9NQX0 595 aa23.02■■□□□ 1.28
NUP88-203ENST00000572019 GSG1L2A8MUP6 293 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 GRXCR1A8MXD5 290 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 F5H6K3 240 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 HMMRO75330 724 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 KLRC3Q07444 240 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 MAMDC4Q6UXC1 1216 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 AMOTL1Q8IY63 956 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 CPXCR1Q8N123 301 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 TOX2Q96NM4 488 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 TSEN34Q9BSV6 310 aaKnown RBP23.01■■□□□ 1.27
NUP88-203ENST00000572019 RAVER2Q9HCJ3 691 aaKnown RBP23.01■■□□□ 1.27
NUP88-203ENST00000572019 SYNGAP1Q96PV0 1343 aa23.01■■□□□ 1.27
NUP88-203ENST00000572019 PTGS1P23219 599 aa23■■□□□ 1.27
NUP88-203ENST00000572019 PBX2P40425 430 aa23■■□□□ 1.27
NUP88-203ENST00000572019 EPB41L4AQ9HCS5 686 aaPredicted RBP23■■□□□ 1.27
NUP88-203ENST00000572019 ARPP21Q9UBL0 812 aaPredicted RBP23■■□□□ 1.27
NUP88-203ENST00000572019 FAM184BQ9ULE4 1060 aa23■■□□□ 1.27
NUP88-203ENST00000572019 LRRC37A2A6NM11 1700 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 MUC3AQ02505 3323 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 IGKV6D-41A0A0C4DH26 115 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 CTAGE5O15320 804 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 TIMP1P01033 207 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 COPB2P35606 906 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 TSHZ3Q63HK5 1081 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 OSBP2Q969R2 916 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 DDX11Q96FC9 970 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 DDRGK1Q96HY6 314 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 NYAP2Q9P242 653 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 LCTP09848 1927 aa22.99■■□□□ 1.27
NUP88-203ENST00000572019 TMEM265A0A087WTH1 108 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 DCDC2CA8MYV0 355 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 MINDY4BA8MYZ0 360 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 PRDM1O75626 825 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 CDK7P50613 346 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 SBK1Q52WX2 424 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 KATNBL1Q9H079 304 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 ZNF576Q9H609 170 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.98■■□□□ 1.27
NUP88-203ENST00000572019 CLIP2Q9UDT6 1046 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 DDX19BQ9UMR2 479 aa22.98■■□□□ 1.27
NUP88-203ENST00000572019 DDX49Q9Y6V7 483 aaKnown RBP22.98■■□□□ 1.27
NUP88-203ENST00000572019 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.97■■□□□ 1.27
NUP88-203ENST00000572019 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.97■■□□□ 1.27
NUP88-203ENST00000572019 MOXD2PA6NHM9 499 aa22.97■■□□□ 1.27
NUP88-203ENST00000572019 DUSP11O75319 330 aaKnown RBP22.97■■□□□ 1.27
NUP88-203ENST00000572019 ASGR1P07306 291 aa22.97■■□□□ 1.27
NUP88-203ENST00000572019 C6orf222P0C671 652 aaPredicted RBP22.97■■□□□ 1.27
NUP88-203ENST00000572019 ACRP10323 421 aa22.97■■□□□ 1.27
NUP88-203ENST00000572019 CST5P28325 142 aaPredicted RBP22.97■■□□□ 1.27
NUP88-203ENST00000572019 ACVR2BQ13705 512 aa22.97■■□□□ 1.27
NUP88-203ENST00000572019 CCDC144BQ3MJ40 725 aa22.97■■□□□ 1.27
NUP88-203ENST00000572019 TMEM240Q5SV17 173 aa22.97■■□□□ 1.27
NUP88-203ENST00000572019 LRRC47Q8N1G4 583 aaKnown RBP22.97■■□□□ 1.27
NUP88-203ENST00000572019 MSL3Q8N5Y2 521 aaKnown RBP22.97■■□□□ 1.27
NUP88-203ENST00000572019 NUP133Q8WUM0 1156 aa22.97■■□□□ 1.27
NUP88-203ENST00000572019 KIFC2Q96AC6 838 aa22.97■■□□□ 1.27
NUP88-203ENST00000572019 CHD9Q3L8U1 2897 aa22.96■■□□□ 1.27
NUP88-203ENST00000572019 ATP2A1O14983 1001 aa22.96■■□□□ 1.27
NUP88-203ENST00000572019 CSF2RAP15509 400 aa22.96■■□□□ 1.27
NUP88-203ENST00000572019 MFSD5Q6N075 450 aa22.96■■□□□ 1.27
NUP88-203ENST00000572019 PRPF38AQ8NAV1 312 aaKnown RBP22.96■■□□□ 1.27
NUP88-203ENST00000572019 TIFAQ96CG3 184 aa22.96■■□□□ 1.27
NUP88-203ENST00000572019 CEP95Q96GE4 821 aa22.96■■□□□ 1.27
NUP88-203ENST00000572019 UPF3AQ9H1J1 476 aaKnown RBP22.96■■□□□ 1.27
NUP88-203ENST00000572019 SLC38A10Q9HBR0 1119 aa22.96■■□□□ 1.27
NUP88-203ENST00000572019 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.95■■□□□ 1.26
NUP88-203ENST00000572019 M0R2C6 588 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 ASTN1O14525 1302 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 CNTN2Q02246 1040 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 C20orf194Q5TEA3 1177 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms