RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 CENPOQ9BU64 300 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 NUP58Q9BVL2 599 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 CLSTN2Q9H4D0 955 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 PIDD1Q9HB75 910 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 RHBDL2Q9NX52 303 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 CYP46A1Q9Y6A2 500 aa12.09□□□□□ -0.47
CLK3-226ENST00000569406 EP400Q96L91 3159 aa12.08□□□□□ -0.47
CLK3-226ENST00000569406 BCL9O00512 1426 aa12.08□□□□□ -0.47
CLK3-226ENST00000569406 DYTNA2CJ06 578 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 STIM1Q13586 685 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 CTNNBL1Q8WYA6 563 aaPredicted RBP12.08□□□□□ -0.48
CLK3-226ENST00000569406 XPO4Q9C0E2 1151 aaKnown RBP12.08□□□□□ -0.48
CLK3-226ENST00000569406 CWC25Q9NXE8 425 aaPredicted RBP12.08□□□□□ -0.48
CLK3-226ENST00000569406 GALNT8Q9NY28 637 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 IMPACTQ9P2X3 320 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 COL14A1Q05707 1796 aaKnown RBP12.08□□□□□ -0.48
CLK3-226ENST00000569406 RREB1Q92766 1687 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 SH3TC1Q8TE82 1336 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 A0A1B0GVL5 298 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 FUT4P22083 530 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 DEUP1Q05D60 604 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 Q6ZUG5 572 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 GALNT15Q8N3T1 639 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 ANO10Q9NW15 660 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 HIP1O00291 1037 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 ANP32DO95626 131 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 SESN3P58005 492 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 GUCY1B3Q02153 619 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 SYNE3Q6ZMZ3 975 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 CCDC80Q76M96 950 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 TEKT4Q8WW24 435 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 GPR108Q9NPR9 543 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 INCENPQ9NQS7 918 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 L3MBTL1Q9Y468 752 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 DOT1LQ8TEK3 1739 aa12.08□□□□□ -0.48
CLK3-226ENST00000569406 NRAPQ86VF7 1730 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 KBTBD3Q8NAB2 608 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.07□□□□□ -0.482e-8■■■■□ 19.8
CLK3-226ENST00000569406 RAB21Q9UL25 225 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 ROBO1Q9Y6N7 1651 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 VWA3AA6NCI4 1184 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 TRIM28Q13263 835 aaKnown RBP12.07□□□□□ -0.48
CLK3-226ENST00000569406 WHAMMP3Q1A5X7 153 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 CCDC57Q2TAC2 916 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 UTP6Q9NYH9 597 aaKnown RBP12.07□□□□□ -0.48
CLK3-226ENST00000569406 ITM2BQ9Y287 266 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 TMEM98Q9Y2Y6 226 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 BZW2Q9Y6E2 419 aaKnown RBP12.07□□□□□ -0.48
CLK3-226ENST00000569406 U3KPZ7 1027 aaPredicted RBP12.07□□□□□ -0.48
CLK3-226ENST00000569406 CUTAO60888 179 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 CSF1RP07333 972 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 HLFQ16534 295 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.07□□□□□ -0.48
CLK3-226ENST00000569406 SPATS2Q86XZ4 545 aaKnown RBP12.07□□□□□ -0.48
CLK3-226ENST00000569406 NKX2-3Q8TAU0 364 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 ACSBG1Q96GR2 724 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 SPATA32Q96LK8 384 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 SH2B1Q9NRF2 756 aaPredicted RBP12.07□□□□□ -0.48
CLK3-226ENST00000569406 C15orf41Q9Y2V0 281 aa12.07□□□□□ -0.48
CLK3-226ENST00000569406 MYH14Q7Z406 1995 aaKnown RBP12.06□□□□□ -0.48
CLK3-226ENST00000569406 ATP1A2P50993 1020 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 ADCY1Q08828 1119 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 SCARF1Q14162 830 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 DZIP1Q86YF9 867 aaKnown RBP12.06□□□□□ -0.48
CLK3-226ENST00000569406 UHMK1Q8TAS1 419 aaKnown RBP12.06□□□□□ -0.48
CLK3-226ENST00000569406 MAGEC3Q8TD91 643 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 ATRIPQ8WXE1 791 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 NOD2Q9HC29 1040 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 PREBQ9HCU5 417 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 STRN4Q9NRL3 753 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 PPP2R2CQ9Y2T4 447 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 ARAP2Q8WZ64 1704 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 CIAO1O76071 339 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 TCIRG1Q13488 830 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 STX1AQ16623 288 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 CCDC92Q53HC0 331 aaPredicted RBP12.06□□□□□ -0.48
CLK3-226ENST00000569406 RBM26Q5T8P6 1007 aaKnown RBP12.06□□□□□ -0.48
CLK3-226ENST00000569406 DNAJC10Q8IXB1 793 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 TEKT1Q969V4 418 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 OSBPL1AQ9BXW6 950 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 ZFATQ9P243 1243 aa12.06□□□□□ -0.48
CLK3-226ENST00000569406 EYA2O00167 538 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 DIAPH2O60879 1101 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 PFDN1O60925 122 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 TFRCP02786 760 aaKnown RBP12.05□□□□□ -0.48
CLK3-226ENST00000569406 CLTAP09496 248 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 NAT2P11245 290 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 CUL4BQ13620 913 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 NUGGCQ68CJ6 796 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 MSL1Q68DK7 614 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 IQCF2Q8IXL9 164 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 TAF4BQ92750 862 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 PLA2G12BQ9BX93 195 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 AGXT2Q9BYV1 514 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 HELLSQ9NRZ9 838 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 ZNHIT6Q9NWK9 470 aaKnown RBP12.05□□□□□ -0.48
CLK3-226ENST00000569406 C2CD2Q9Y426 696 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 CASZ1Q86V15 1759 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 KRT38O76015 456 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 VIL1P09327 827 aaKnown RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms