RNA–Protein interactions for RNA: ENST00000569066.2

UBR1-208, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 1 (best)

Gene UBR1, Length 2,250 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-208ENST00000569066 GTF2IRD2Q86UP8 949 aa8.14□□□□□ -1.11
UBR1-208ENST00000569066 DTWD2Q8NBA8 298 aa8.14□□□□□ -1.11
UBR1-208ENST00000569066 SLC52A2Q9HAB3 445 aa8.14□□□□□ -1.11
UBR1-208ENST00000569066 U3KQE9 123 aa8.14□□□□□ -1.11
UBR1-208ENST00000569066 FAM83GA6ND36 823 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 PRAMEF1O95521 474 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 APBA3O96018 575 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 SCUBE1Q8IWY4 988 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 SLC7A14Q8TBB6 771 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 RCC1LQ96I51 464 aaKnown RBP8.13□□□□□ -1.11
UBR1-208ENST00000569066 MCMBPQ9BTE3 642 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 TARS2Q9BW92 718 aaKnown RBP8.13□□□□□ -1.11
UBR1-208ENST00000569066 YIPF2Q9BWQ6 316 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 FGD2Q7Z6J4 655 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 TXNRD3Q86VQ6 643 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 TMEM145Q8NBT3 493 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 HEXIM2Q96MH2 286 aaKnown RBP8.13□□□□□ -1.11
UBR1-208ENST00000569066 BRINP2Q9C0B6 783 aa8.13□□□□□ -1.11
UBR1-208ENST00000569066 HMX2A2RU54 273 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 CNGA1P29973 690 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 CTSKP43235 329 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 CDKN1CP49918 316 aaPredicted RBP8.12□□□□□ -1.11
UBR1-208ENST00000569066 ZNF460Q14592 562 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 NTRK3Q16288 839 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 UVSSAQ2YD98 709 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 GATA6Q92908 595 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 NDOR1Q9UHB4 597 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 FHOD1Q9Y613 1164 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 PLD2O14939 933 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 STAT3P40763 770 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 GFRA1P56159 465 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 CRTC3Q6UUV7 619 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 C1orf159Q96HA4 380 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 NACC1Q96RE7 527 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 PRDM5Q9NQX1 630 aaPredicted RBP8.12□□□□□ -1.11
UBR1-208ENST00000569066 TRAF6Q9Y4K3 522 aa8.12□□□□□ -1.11
UBR1-208ENST00000569066 ZC3H12BQ5HYM0 836 aaKnown RBP8.11□□□□□ -1.11
UBR1-208ENST00000569066 DENND5AQ6IQ26 1287 aa8.11□□□□□ -1.11
UBR1-208ENST00000569066 CNNM4Q6P4Q7 775 aa8.11□□□□□ -1.11
UBR1-208ENST00000569066 FAM214BQ7L5A3 538 aa8.11□□□□□ -1.11
UBR1-208ENST00000569066 RNF180Q86T96 592 aa8.11□□□□□ -1.11
UBR1-208ENST00000569066 DSCC1Q9BVC3 393 aa8.11□□□□□ -1.11
UBR1-208ENST00000569066 TRIM39Q9HCM9 518 aa8.11□□□□□ -1.11
UBR1-208ENST00000569066 SFMBT1Q9UHJ3 866 aa8.11□□□□□ -1.11
UBR1-208ENST00000569066 STXBP3O00186 592 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 KCNJ6P48051 423 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 TAF7LQ5H9L4 462 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 BRAPQ7Z569 592 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 LRRTM3Q86VH5 581 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 SYTL5Q8TDW5 730 aaPredicted RBP8.1□□□□□ -1.11
UBR1-208ENST00000569066 TBC1D32Q96NH3 1257 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 IPO9Q96P70 1041 aaKnown RBP8.1□□□□□ -1.11
UBR1-208ENST00000569066 WASH4PA8MWX3 477 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 DNAJC8O75937 253 aaPredicted RBP8.1□□□□□ -1.11
UBR1-208ENST00000569066 SNRPB2P08579 225 aaKnown RBP8.1□□□□□ -1.11
UBR1-208ENST00000569066 ECI1P42126 302 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 SUMO1P63165 101 aaKnown RBP8.1□□□□□ -1.11
UBR1-208ENST00000569066 TNK2Q07912 1038 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 POMZP3Q6PJE2 187 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 ZNF765Q7L2R6 523 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 NKX2-4Q9H2Z4 354 aa8.1□□□□□ -1.11
UBR1-208ENST00000569066 ASXL2Q76L83 1435 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 GSG1L2A8MUP6 293 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 NMIQ13287 307 aaPredicted RBP8.09□□□□□ -1.11
UBR1-208ENST00000569066 FBXL6Q8N531 539 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 SCLYQ96I15 445 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 GPRC5CQ9NQ84 441 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 FAM170BA6NMN3 283 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 SIGLEC6O43699 453 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 SCRN1Q12765 414 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 FNDC3BQ53EP0 1204 aaKnown RBP8.09□□□□□ -1.11
UBR1-208ENST00000569066 SFRP5Q5T4F7 317 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 PAOXQ6QHF9 649 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 KRT26Q7Z3Y9 468 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 PRPF38AQ8NAV1 312 aaKnown RBP8.09□□□□□ -1.11
UBR1-208ENST00000569066 SSBP4Q9BWG4 385 aaPredicted RBP8.09□□□□□ -1.11
UBR1-208ENST00000569066 CHST7Q9NS84 486 aa8.09□□□□□ -1.11
UBR1-208ENST00000569066 DDX56Q9NY93 547 aaKnown RBP8.09□□□□□ -1.11
UBR1-208ENST00000569066 CCDC163A0A0D9SF12 145 aa8.08□□□□□ -1.12
UBR1-208ENST00000569066 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.08□□□□□ -1.12
UBR1-208ENST00000569066 RFPL3O75679 317 aa8.08□□□□□ -1.12
UBR1-208ENST00000569066 RASGRP1O95267 797 aa8.08□□□□□ -1.12
UBR1-208ENST00000569066 IFNGR1P15260 489 aa8.08□□□□□ -1.12
UBR1-208ENST00000569066 CD163Q86VB7 1156 aa8.08□□□□□ -1.12
UBR1-208ENST00000569066 ATP8A1Q9Y2Q0 1164 aa8.08□□□□□ -1.12
UBR1-208ENST00000569066 DHX15O43143 795 aaKnown RBP8.08□□□□□ -1.12
UBR1-208ENST00000569066 STRA8Q7Z7C7 330 aa8.08□□□□□ -1.12
UBR1-208ENST00000569066 FAM181AQ8N9Y4 354 aa8.08□□□□□ -1.12
UBR1-208ENST00000569066 CHAC2Q8WUX2 184 aa8.08□□□□□ -1.12
UBR1-208ENST00000569066 SCARF2Q96GP6 870 aaPredicted RBP8.08□□□□□ -1.12
UBR1-208ENST00000569066 MRPL4Q9BYD3 311 aaKnown RBP8.08□□□□□ -1.12
UBR1-208ENST00000569066 TNPO3Q9Y5L0 923 aaKnown RBP8.08□□□□□ -1.12
UBR1-208ENST00000569066 CD3EP07766 207 aa8.07□□□□□ -1.12
UBR1-208ENST00000569066 USP53Q70EK8 1073 aa8.07□□□□□ -1.12
UBR1-208ENST00000569066 MFSD14AQ96MC6 490 aa8.07□□□□□ -1.12
UBR1-208ENST00000569066 HDAC8Q9BY41 377 aa8.07□□□□□ -1.12
UBR1-208ENST00000569066 C7orf69Q9H7B7 122 aa8.07□□□□□ -1.12
UBR1-208ENST00000569066 KCNQ2O43526 872 aa8.06□□□□□ -1.12
UBR1-208ENST00000569066 AMPD2Q01433 879 aa8.06□□□□□ -1.12
UBR1-208ENST00000569066 FAM50AQ14320 339 aaKnown RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms