RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 EYSQ5T1H1 3165 aa18.56■□□□□ 0.56
NME3-211ENST00000568561 A0A1W2PQ45 241 aaPredicted RBP18.56■□□□□ 0.56
NME3-211ENST00000568561 A0A1W2PQY0 241 aa18.56■□□□□ 0.56
NME3-211ENST00000568561 RNF113AO15541 343 aaKnown RBP18.56■□□□□ 0.56
NME3-211ENST00000568561 PQBP1O60828 265 aaKnown RBP18.56■□□□□ 0.56
NME3-211ENST00000568561 TDO2P48775 406 aa18.56■□□□□ 0.56
NME3-211ENST00000568561 ZNF697Q5TEC3 545 aa18.56■□□□□ 0.56
NME3-211ENST00000568561 FAM109BQ6ICB4 259 aaPredicted RBP18.56■□□□□ 0.56
NME3-211ENST00000568561 RNF180Q86T96 592 aa18.56■□□□□ 0.56
NME3-211ENST00000568561 CPXCR1Q8N123 301 aa18.56■□□□□ 0.56
NME3-211ENST00000568561 LRRC47Q8N1G4 583 aaKnown RBP18.56■□□□□ 0.56
NME3-211ENST00000568561 NYAP2Q9P242 653 aa18.56■□□□□ 0.56
NME3-211ENST00000568561 CLIP2Q9UDT6 1046 aa18.56■□□□□ 0.56
NME3-211ENST00000568561 CNPY2Q9Y2B0 182 aa18.56■□□□□ 0.56
NME3-211ENST00000568561 DIS3Q9Y2L1 958 aaKnown RBP18.56■□□□□ 0.56
NME3-211ENST00000568561 SYNRGQ9UMZ2 1314 aa18.55■□□□□ 0.56
NME3-211ENST00000568561 IGKV6D-41A0A0C4DH26 115 aa18.55■□□□□ 0.56
NME3-211ENST00000568561 ADAMTS4O75173 837 aa18.55■□□□□ 0.56
NME3-211ENST00000568561 APPP05067 770 aa18.55■□□□□ 0.56
NME3-211ENST00000568561 AKR1A1P14550 325 aa18.55■□□□□ 0.56
NME3-211ENST00000568561 COPB2P35606 906 aa18.55■□□□□ 0.56
NME3-211ENST00000568561 C1orf53Q5VUE5 145 aa18.55■□□□□ 0.56
NME3-211ENST00000568561 KIFC2Q96AC6 838 aa18.55■□□□□ 0.56
NME3-211ENST00000568561 GPATCH3Q96I76 525 aa18.55■□□□□ 0.56
NME3-211ENST00000568561 RAVER2Q9HCJ3 691 aaKnown RBP18.55■□□□□ 0.56
NME3-211ENST00000568561 ZHX1Q9UKY1 873 aaPredicted RBP18.55■□□□□ 0.56
NME3-211ENST00000568561 CLTBP09497 229 aa18.54■□□□□ 0.56
NME3-211ENST00000568561 EPHB4P54760 987 aa18.54■□□□□ 0.56
NME3-211ENST00000568561 IRX5P78411 483 aaPredicted RBP18.54■□□□□ 0.56
NME3-211ENST00000568561 GIMAP6Q6P9H5 292 aa18.54■□□□□ 0.56
NME3-211ENST00000568561 CHMP4CQ96CF2 233 aa18.54■□□□□ 0.56
NME3-211ENST00000568561 DDX11Q96FC9 970 aa18.54■□□□□ 0.56
NME3-211ENST00000568561 CEP95Q96GE4 821 aa18.54■□□□□ 0.56
NME3-211ENST00000568561 SEC62Q99442 399 aaKnown RBP18.54■□□□□ 0.56
NME3-211ENST00000568561 MYADML2A6NDP7 307 aa18.53■□□□□ 0.56
NME3-211ENST00000568561 SNAI1O95863 264 aaPredicted RBP18.53■□□□□ 0.56
NME3-211ENST00000568561 PRPF38AQ8NAV1 312 aaKnown RBP18.53■□□□□ 0.56
NME3-211ENST00000568561 DCTPP1Q9H773 170 aa18.53■□□□□ 0.56
NME3-211ENST00000568561 DNAJC25-GNG10A0A024R161 153 aa18.52■□□□□ 0.56
NME3-211ENST00000568561 ADCY6O43306 1168 aa18.52■□□□□ 0.56
NME3-211ENST00000568561 ZBED4O75132 1171 aa18.52■□□□□ 0.56
NME3-211ENST00000568561 ACLYP53396 1101 aa18.52■□□□□ 0.56
NME3-211ENST00000568561 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.52■□□□□ 0.56
NME3-211ENST00000568561 OTUD7AQ8TE49 926 aaPredicted RBP18.52■□□□□ 0.56
NME3-211ENST00000568561 CDX2Q99626 313 aaPredicted RBP18.52■□□□□ 0.56
NME3-211ENST00000568561 HOMER2Q9NSB8 354 aa18.52■□□□□ 0.56
NME3-211ENST00000568561 ISY1Q9ULR0 285 aaKnown RBP18.52■□□□□ 0.56
NME3-211ENST00000568561 CTDP1Q9Y5B0 961 aaPredicted RBP18.52■□□□□ 0.56
NME3-211ENST00000568561 TACC3Q9Y6A5 838 aa18.52■□□□□ 0.56
NME3-211ENST00000568561 SYNGAP1Q96PV0 1343 aa18.51■□□□□ 0.55
NME3-211ENST00000568561 ZFYP08048 801 aaPredicted RBP18.51■□□□□ 0.55
NME3-211ENST00000568561 RAG1P15918 1043 aa18.51■□□□□ 0.55
NME3-211ENST00000568561 IFNL3Q8IZI9 196 aa18.51■□□□□ 0.55
NME3-211ENST00000568561 ZNF444Q8N0Y2 327 aaPredicted RBP18.51■□□□□ 0.55
NME3-211ENST00000568561 FGD4Q96M96 766 aa18.51■□□□□ 0.55
NME3-211ENST00000568561 TTYH1Q9H313 450 aaPredicted RBP18.51■□□□□ 0.55
NME3-211ENST00000568561 SLC38A10Q9HBR0 1119 aa18.51■□□□□ 0.55
NME3-211ENST00000568561 STARD7Q9NQZ5 370 aa18.51■□□□□ 0.55
NME3-211ENST00000568561 MTMR4Q9NYA4 1195 aa18.51■□□□□ 0.55
NME3-211ENST00000568561 FAM184BQ9ULE4 1060 aa18.51■□□□□ 0.55
NME3-211ENST00000568561 LRRC37A2A6NM11 1700 aa18.51■□□□□ 0.55
NME3-211ENST00000568561 KIAA0355O15063 1070 aa18.5■□□□□ 0.55
NME3-211ENST00000568561 GNAT2P19087 354 aa18.5■□□□□ 0.55
NME3-211ENST00000568561 MAMDC4Q6UXC1 1216 aa18.5■□□□□ 0.55
NME3-211ENST00000568561 ANKRD35Q8N283 1001 aa18.5■□□□□ 0.55
NME3-211ENST00000568561 MYLIPQ8WY64 445 aa18.5■□□□□ 0.55
NME3-211ENST00000568561 RNPC3Q96LT9 517 aaKnown RBP18.5■□□□□ 0.55
NME3-211ENST00000568561 SEMA6BQ9H3T3 888 aa18.5■□□□□ 0.55
NME3-211ENST00000568561 TMEM39AQ9NV64 488 aa18.5■□□□□ 0.55
NME3-211ENST00000568561 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.5■□□□□ 0.55
NME3-211ENST00000568561 PLIN4Q96Q06 1357 aa18.5■□□□□ 0.55
NME3-211ENST00000568561 VCANP13611 3396 aa18.5■□□□□ 0.55
NME3-211ENST00000568561 PATL2C9JE40 543 aaKnown RBP18.49■□□□□ 0.55
NME3-211ENST00000568561 ATP2A1O14983 1001 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 TTLL1O95922 423 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 FAAP100Q0VG06 881 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 KCNA10Q16322 511 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 SLFN13Q68D06 897 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 RASGRP2Q7LDG7 609 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 MSL3Q8N5Y2 521 aaKnown RBP18.49■□□□□ 0.55
NME3-211ENST00000568561 KLHDC9Q8NEP7 349 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 MKL1Q969V6 931 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 FSD1Q9BTV5 496 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 COL25A1Q9BXS0 654 aaPredicted RBP18.49■□□□□ 0.55
NME3-211ENST00000568561 FEM1BQ9UK73 627 aa18.49■□□□□ 0.55
NME3-211ENST00000568561 PRUNE2Q8WUY3 3088 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 C6orf222P0C671 652 aaPredicted RBP18.48■□□□□ 0.55
NME3-211ENST00000568561 TSPY3P0CV98 308 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 TSPY8P0CW00 308 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 BMP3P12645 472 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 SMAD3P84022 425 aaKnown RBP18.48■□□□□ 0.55
NME3-211ENST00000568561 FPGSQ05932 587 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 ACVR2BQ13705 512 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 CCSAPQ6IQ19 270 aaPredicted RBP18.48■□□□□ 0.55
NME3-211ENST00000568561 ARMCX2Q7L311 632 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 GMCL1P1Q8NEA9 526 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 PI4K2BQ8TCG2 481 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 TSEN34Q9BSV6 310 aaKnown RBP18.48■□□□□ 0.55
NME3-211ENST00000568561 ZNF287Q9HBT7 754 aa18.48■□□□□ 0.55
NME3-211ENST00000568561 LCTP09848 1927 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms