RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 LRRFIP1Q32MZ4 808 aaKnown RBP16.52■□□□□ 0.24
CLN3-235ENST00000568497 FAM47AQ5JRC9 791 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 KIAA1755Q5JYT7 1200 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 C1orf53Q5VUE5 145 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 TMED8Q6PL24 325 aaPredicted RBP16.52■□□□□ 0.24
CLN3-235ENST00000568497 C16orf86Q6ZW13 317 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 NPLOC4Q8TAT6 608 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 NECAB3Q96P71 396 aaPredicted RBP16.52■□□□□ 0.24
CLN3-235ENST00000568497 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.52■□□□□ 0.24
CLN3-235ENST00000568497 RABGAP1Q9Y3P9 1069 aa16.52■□□□□ 0.24
CLN3-235ENST00000568497 MYH8P13535 1937 aa16.52■□□□□ 0.23
CLN3-235ENST00000568497 IGHA2P01877 340 aa16.51■□□□□ 0.23
CLN3-235ENST00000568497 FGAP02671 866 aa16.51■□□□□ 0.23
CLN3-235ENST00000568497 CHMLP26374 656 aa16.51■□□□□ 0.23
CLN3-235ENST00000568497 PPARAQ07869 468 aa16.51■□□□□ 0.23
CLN3-235ENST00000568497 AKNAD1Q5T1N1 836 aa16.51■□□□□ 0.23
CLN3-235ENST00000568497 SIAH1Q8IUQ4 282 aa16.51■□□□□ 0.23
CLN3-235ENST00000568497 DDRGK1Q96HY6 314 aa16.51■□□□□ 0.23
CLN3-235ENST00000568497 ARPP21Q9UBL0 812 aaPredicted RBP16.51■□□□□ 0.23
CLN3-235ENST00000568497 TCF20Q9UGU0 1960 aaKnown RBP16.5■□□□□ 0.23
CLN3-235ENST00000568497 CNMDO75829 334 aa16.5■□□□□ 0.23
CLN3-235ENST00000568497 RASA1P20936 1047 aa16.5■□□□□ 0.23
CLN3-235ENST00000568497 SBK1Q52WX2 424 aa16.5■□□□□ 0.23
CLN3-235ENST00000568497 DPP9Q86TI2 863 aa16.5■□□□□ 0.23
CLN3-235ENST00000568497 EMILIN3Q9NT22 766 aa16.5■□□□□ 0.23
CLN3-235ENST00000568497 PPP4R2Q9NY27 417 aa16.5■□□□□ 0.23
CLN3-235ENST00000568497 SYNGAP1Q96PV0 1343 aa16.49■□□□□ 0.23
CLN3-235ENST00000568497 PQBP1O60828 265 aaKnown RBP16.49■□□□□ 0.23
CLN3-235ENST00000568497 GNAT2P19087 354 aa16.49■□□□□ 0.23
CLN3-235ENST00000568497 PTH1RQ03431 593 aa16.49■□□□□ 0.23
CLN3-235ENST00000568497 GRB14Q14449 540 aa16.49■□□□□ 0.23
CLN3-235ENST00000568497 USP17L2Q6R6M4 530 aa16.49■□□□□ 0.23
CLN3-235ENST00000568497 FEZ1Q99689 392 aa16.49■□□□□ 0.23
CLN3-235ENST00000568497 TSPYL2Q9H2G4 693 aaPredicted RBP16.49■□□□□ 0.23
CLN3-235ENST00000568497 TMEM39AQ9NV64 488 aa16.49■□□□□ 0.23
CLN3-235ENST00000568497 TAF6LQ9Y6J9 622 aa16.49■□□□□ 0.23
CLN3-235ENST00000568497 SEPT4O43236 478 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 NMT2O60551 498 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 PBX2P40425 430 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 LRRC41Q15345 812 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 RRP12Q5JTH9 1297 aaKnown RBP16.48■□□□□ 0.23
CLN3-235ENST00000568497 SAMD1Q6SPF0 538 aaPredicted RBP16.48■□□□□ 0.23
CLN3-235ENST00000568497 RASGRP2Q7LDG7 609 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 TBC1D10CQ8IV04 446 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 AMOTL1Q8IY63 956 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 SPICE1Q8N0Z3 855 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 NACAP1Q9BZK3 213 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 MKNK2Q9HBH9 465 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 CABP5Q9NP86 173 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 PLXNA1Q9UIW2 1896 aa16.48■□□□□ 0.23
CLN3-235ENST00000568497 BDP1A6H8Y1 2624 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 USP17L15C9J2P7 530 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 USP17L13C9JLJ4 530 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 USP17L11C9JVI0 530 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 USP17L18D6R9N7 530 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 USP17L22D6RA61 530 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 USP17L17D6RBQ6 530 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 USP17L19D6RCP7 530 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 USP17L20D6RJB6 530 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 RAD21O60216 631 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 USP17L24Q0WX57 530 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 GIMAP6Q6P9H5 292 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 LBX2Q6XYB7 198 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 MICALL1Q8N3F8 863 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 C12orf42Q96LP6 360 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 PBX4Q9BYU1 374 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 SWAP70Q9UH65 585 aa16.47■□□□□ 0.23
CLN3-235ENST00000568497 KIAA0355O15063 1070 aa16.46■□□□□ 0.23
CLN3-235ENST00000568497 EEF2P13639 858 aaKnown RBP16.46■□□□□ 0.23
CLN3-235ENST00000568497 OLFML2BQ68BL8 750 aa16.46■□□□□ 0.23
CLN3-235ENST00000568497 LRRC47Q8N1G4 583 aaKnown RBP16.46■□□□□ 0.23
CLN3-235ENST00000568497 NUP88Q99567 741 aaPredicted RBP16.46■□□□□ 0.23
CLN3-235ENST00000568497 LRFN3Q9BTN0 628 aa16.46■□□□□ 0.23
CLN3-235ENST00000568497 TOMM22Q9NS69 142 aa16.46■□□□□ 0.23
CLN3-235ENST00000568497 ARIH1Q9Y4X5 557 aaPredicted RBP16.46■□□□□ 0.23
CLN3-235ENST00000568497 GRXCR1A8MXD5 290 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 ADORA2AP29274 412 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 ICA1Q05084 483 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 ADGRE1Q14246 886 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 PRAMEF19Q5SWL8 479 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 CATSPERGQ6ZRH7 1159 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 TMEM179Q6ZVK1 233 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.45■□□□□ 0.223e-6■□□□□ 10.1
CLN3-235ENST00000568497 BTBD7Q9P203 1132 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 MTMR7Q9Y216 660 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.45■□□□□ 0.22
CLN3-235ENST00000568497 ROBO3Q96MS0 1386 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 NEDD4P46934 1319 aa16.45■□□□□ 0.22
CLN3-235ENST00000568497 TFAP4Q01664 338 aa16.44■□□□□ 0.22
CLN3-235ENST00000568497 COL9A3Q14050 684 aaPredicted RBP16.44■□□□□ 0.22
CLN3-235ENST00000568497 CEP95Q96GE4 821 aa16.44■□□□□ 0.22
CLN3-235ENST00000568497 XPNPEP3Q9NQH7 507 aa16.44■□□□□ 0.22
CLN3-235ENST00000568497 PHF24Q9UPV7 400 aa16.44■□□□□ 0.22
CLN3-235ENST00000568497 RANBP6O60518 1105 aaKnown RBP16.43■□□□□ 0.22
CLN3-235ENST00000568497 TFF2Q03403 129 aa16.43■□□□□ 0.22
CLN3-235ENST00000568497 SKIV2LQ15477 1246 aaKnown RBP16.43■□□□□ 0.22
CLN3-235ENST00000568497 ALX1Q15699 326 aa16.43■□□□□ 0.22
CLN3-235ENST00000568497 TMEM31Q5JXX7 168 aa16.43■□□□□ 0.22
CLN3-235ENST00000568497 CCDC174Q6PII3 467 aa16.43■□□□□ 0.22
CLN3-235ENST00000568497 ALYREFQ86V81 257 aaKnown RBP16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms