RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 G3BP1Q13283 466 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLK3-222ENST00000568232 KCTD2Q14681 263 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 CCDC158Q5M9N0 1113 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 SIAH1Q8IUQ4 282 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 CERS4Q9HA82 394 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 FAM184BQ9ULE4 1060 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 DIS3Q9Y2L1 958 aaKnown RBP14.34□□□□□ -0.11
CLK3-222ENST00000568232 MTCH2Q9Y6C9 303 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 MYO9BQ13459 2157 aa14.34□□□□□ -0.11
CLK3-222ENST00000568232 MYH1P12882 1939 aa14.33□□□□□ -0.11
CLK3-222ENST00000568232 IDH1O75874 414 aaKnown RBP14.33□□□□□ -0.12
CLK3-222ENST00000568232 POLR3DP05423 398 aaPredicted RBP14.33□□□□□ -0.12
CLK3-222ENST00000568232 C6orf222P0C671 652 aaPredicted RBP14.33□□□□□ -0.12
CLK3-222ENST00000568232 CCL23P55773 120 aa14.33□□□□□ -0.12
CLK3-222ENST00000568232 GABPAQ06546 454 aa14.33□□□□□ -0.12
CLK3-222ENST00000568232 MAGEB6Q8N7X4 407 aa14.33□□□□□ -0.12
CLK3-222ENST00000568232 CD320Q9NPF0 282 aa14.33□□□□□ -0.12
CLK3-222ENST00000568232 FBXO28Q9NVF7 368 aa14.33□□□□□ -0.12
CLK3-222ENST00000568232 ZHX1Q9UKY1 873 aaPredicted RBP14.33□□□□□ -0.12
CLK3-222ENST00000568232 GBF1Q92538 1859 aa14.32□□□□□ -0.12
CLK3-222ENST00000568232 MYO5AQ9Y4I1 1855 aaKnown RBP14.32□□□□□ -0.12
CLK3-222ENST00000568232 PNMA6EA0A0J9YXQ4 647 aa14.32□□□□□ -0.12
CLK3-222ENST00000568232 A0A0U1RQG5 324 aaPredicted RBP14.32□□□□□ -0.12
CLK3-222ENST00000568232 EPOPA6NHQ4 379 aa14.32□□□□□ -0.12
CLK3-222ENST00000568232 DUSP11O75319 330 aaKnown RBP14.32□□□□□ -0.12
CLK3-222ENST00000568232 CD4P01730 458 aa14.32□□□□□ -0.12
CLK3-222ENST00000568232 TNNI3KQ59H18 835 aa14.32□□□□□ -0.12
CLK3-222ENST00000568232 RIOX2Q8IUF8 465 aa14.32□□□□□ -0.12
CLK3-222ENST00000568232 MTIF3Q9H2K0 278 aaKnown RBP14.32□□□□□ -0.12
CLK3-222ENST00000568232 ADAMTS5Q9UNA0 930 aa14.32□□□□□ -0.12
CLK3-222ENST00000568232 FPGT-TNNI3KV9GXZ4 949 aa14.32□□□□□ -0.12
CLK3-222ENST00000568232 WDFY4Q6ZS81 3184 aa14.31□□□□□ -0.12
CLK3-222ENST00000568232 PIEZO1Q92508 2521 aa14.31□□□□□ -0.12
CLK3-222ENST00000568232 TLR3O15455 904 aaKnown RBP14.31□□□□□ -0.12
CLK3-222ENST00000568232 CST5P28325 142 aaPredicted RBP14.31□□□□□ -0.12
CLK3-222ENST00000568232 STAT3P40763 770 aa14.31□□□□□ -0.12
CLK3-222ENST00000568232 MRE11P49959 708 aa14.31□□□□□ -0.12
CLK3-222ENST00000568232 PCSK9Q8NBP7 692 aaKnown RBP14.31□□□□□ -0.12
CLK3-222ENST00000568232 SNX27Q96L92 541 aa14.31□□□□□ -0.12
CLK3-222ENST00000568232 HIPK3Q9H422 1215 aa14.31□□□□□ -0.12
CLK3-222ENST00000568232 PCDHA11Q9Y5I1 949 aa14.31□□□□□ -0.12
CLK3-222ENST00000568232 SLC4A7Q9Y6M7 1214 aa14.31□□□□□ -0.12
CLK3-222ENST00000568232 ZNFX1Q9P2E3 1918 aaKnown RBP14.31□□□□□ -0.12
CLK3-222ENST00000568232 ZBBXA8MT70 800 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 SMIM22K7EJ46 135 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 GTPBP6O43824 516 aaPredicted RBP14.3□□□□□ -0.12
CLK3-222ENST00000568232 GNAI3P08754 354 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 POU3F3P20264 500 aaPredicted RBP14.3□□□□□ -0.12
CLK3-222ENST00000568232 GNASQ5JWF2 1037 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 VWCEQ96DN2 955 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 PHF12Q96QT6 1004 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 API5Q9BZZ5 524 aaKnown RBP14.3□□□□□ -0.12
CLK3-222ENST00000568232 ANTXR1Q9H6X2 564 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 VCPKMTQ9H867 229 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 COG5Q9UP83 839 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 TMX2Q9Y320 296 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 MUC6Q6W4X9 2439 aa14.3□□□□□ -0.12
CLK3-222ENST00000568232 E9PSI1 815 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 PI4K2BG5E9Z4 385 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 VWA5AO00534 786 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 WDR46O15213 610 aaKnown RBP14.29□□□□□ -0.12
CLK3-222ENST00000568232 CTAGE5O15320 804 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 GALR2O43603 387 aaPredicted RBP14.29□□□□□ -0.12
CLK3-222ENST00000568232 CA3P07451 260 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 CYP2D6P10635 497 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 CLCN6P51797 869 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 GJA9P57773 515 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 BEX3Q00994 111 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 ACVR2BQ13705 512 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 CCDC144BQ3MJ40 725 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 TMEM179Q6ZVK1 233 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 HLA-CQ95604 372 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 DYNLL2Q96FJ2 89 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 ZNF512BQ96KM6 892 aaPredicted RBP14.29□□□□□ -0.12
CLK3-222ENST00000568232 RIOK1Q9BRS2 568 aaKnown RBP14.29□□□□□ -0.12
CLK3-222ENST00000568232 UPF3AQ9H1J1 476 aaKnown RBP14.29□□□□□ -0.12
CLK3-222ENST00000568232 WNT8AQ9H1J5 351 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 TLR7Q9NYK1 1049 aaKnown RBP14.29□□□□□ -0.12
CLK3-222ENST00000568232 ZNF214Q9UL59 606 aaPredicted RBP14.29□□□□□ -0.12
CLK3-222ENST00000568232 LRRC37A2A6NM11 1700 aa14.29□□□□□ -0.12
CLK3-222ENST00000568232 ARHGEF15O94989 841 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 AKR1B1P15121 316 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 ATP2A2P16615 1042 aaKnown RBP14.28□□□□□ -0.12
CLK3-222ENST00000568232 ICA1Q05084 483 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 SLFN5Q08AF3 891 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 MAMDC4Q6UXC1 1216 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 CERS3Q8IU89 383 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 MSL3Q8N5Y2 521 aaKnown RBP14.28□□□□□ -0.12
CLK3-222ENST00000568232 REPS2Q8NFH8 660 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 SCLYQ96I15 445 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 TRPV6Q9H1D0 765 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 SPC25Q9HBM1 224 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 ARHGEF10LQ9HCE6 1279 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 GPR108Q9NPR9 543 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 MCM9Q9NXL9 1143 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 RIPK3Q9Y572 518 aa14.28□□□□□ -0.12
CLK3-222ENST00000568232 IGSF3O75054 1194 aa14.27□□□□□ -0.13
CLK3-222ENST00000568232 TTLL4Q14679 1199 aa14.27□□□□□ -0.13
CLK3-222ENST00000568232 TMEM67Q5HYA8 995 aa14.27□□□□□ -0.13
CLK3-222ENST00000568232 CXCL17Q6UXB2 119 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms