RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 PRAMEF19Q5SWL8 479 aa12.86□□□□□ -0.35
VPS39-208ENST00000564994 SLFN13Q68D06 897 aa12.86□□□□□ -0.35
VPS39-208ENST00000564994 C7orf61Q8IZ16 206 aa12.86□□□□□ -0.35
VPS39-208ENST00000564994 PRPF38AQ8NAV1 312 aaKnown RBP12.86□□□□□ -0.35
VPS39-208ENST00000564994 OSBPL3Q9H4L5 887 aa12.86□□□□□ -0.35
VPS39-208ENST00000564994 SUPT16HQ9Y5B9 1047 aaKnown RBP12.86□□□□□ -0.35
VPS39-208ENST00000564994 TRIM6-TRIM34B2RNG4 842 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 MSCO60682 206 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 FGAP02671 866 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 FGRP09769 529 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 HSPD1P10809 573 aaKnown RBP12.85□□□□□ -0.35
VPS39-208ENST00000564994 ZNF792Q3KQV3 632 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 ANO1Q5XXA6 986 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 SNRNP48Q6IEG0 339 aaKnown RBP12.85□□□□□ -0.35
VPS39-208ENST00000564994 RASGRP2Q7LDG7 609 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 TICAM2Q86XR7 235 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 RILPL2Q969X0 211 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 KIFC2Q96AC6 838 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 CHMP4CQ96CF2 233 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 TEX13BQ9BXU2 312 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 SLC38A10Q9HBR0 1119 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 SLC5A4Q9NY91 659 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 PCDH10Q9P2E7 1040 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 FEM1BQ9UK73 627 aa12.85□□□□□ -0.35
VPS39-208ENST00000564994 ZMYND8Q9ULU4 1186 aaPredicted RBP12.85□□□□□ -0.35
VPS39-208ENST00000564994 LAMA4Q16363 1823 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 TSPY2A6NKD2 308 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 ATP2A1O14983 1001 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 SEPT4O43236 478 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 ORC4O43929 436 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 BMP3P12645 472 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 SDSP20132 328 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 COPB2P35606 906 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 NOVP48745 357 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 KCTD2Q14681 263 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 LRRC26Q2I0M4 334 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 CPXCR1Q8N123 301 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 RAVER2Q9HCJ3 691 aaKnown RBP12.84□□□□□ -0.35
VPS39-208ENST00000564994 CCDC171Q6TFL3 1326 aa12.84□□□□□ -0.35
VPS39-208ENST00000564994 RANBP6O60518 1105 aaKnown RBP12.83□□□□□ -0.36
VPS39-208ENST00000564994 ZBED4O75132 1171 aa12.83□□□□□ -0.36
VPS39-208ENST00000564994 TAL1P17542 331 aaPredicted RBP12.83□□□□□ -0.36
VPS39-208ENST00000564994 SYN1P17600 705 aa12.83□□□□□ -0.36
VPS39-208ENST00000564994 MCCP23508 829 aa12.83□□□□□ -0.36
VPS39-208ENST00000564994 SLC4A3P48751 1232 aa12.83□□□□□ -0.36
VPS39-208ENST00000564994 GJC2Q5T442 439 aaPredicted RBP12.83□□□□□ -0.36
VPS39-208ENST00000564994 GMCL1Q96IK5 515 aa12.83□□□□□ -0.36
VPS39-208ENST00000564994 TINF2Q9BSI4 451 aa12.83□□□□□ -0.36
VPS39-208ENST00000564994 STX8Q9UNK0 236 aa12.83□□□□□ -0.36
VPS39-208ENST00000564994 DIS3Q9Y2L1 958 aaKnown RBP12.83□□□□□ -0.36
VPS39-208ENST00000564994 ZMYM6O95789 1325 aa12.83□□□□□ -0.36
VPS39-208ENST00000564994 DNAJC25-GNG10A0A024R161 153 aa12.82□□□□□ -0.36
VPS39-208ENST00000564994 TMEM232C9JQI7 657 aa12.82□□□□□ -0.36
VPS39-208ENST00000564994 DNM1LO00429 736 aa12.82□□□□□ -0.36
VPS39-208ENST00000564994 SLC1A4P43007 532 aa12.82□□□□□ -0.36
VPS39-208ENST00000564994 STAT2P52630 851 aa12.82□□□□□ -0.36
VPS39-208ENST00000564994 HAND2P61296 217 aa12.82□□□□□ -0.36
VPS39-208ENST00000564994 GDF15Q99988 308 aa12.82□□□□□ -0.36
VPS39-208ENST00000564994 SENP6Q9GZR1 1112 aaPredicted RBP12.82□□□□□ -0.36
VPS39-208ENST00000564994 ZNF536O15090 1300 aa12.82□□□□□ -0.36
VPS39-208ENST00000564994 ZNF865P0CJ78 1059 aaPredicted RBP12.81□□□□□ -0.36
VPS39-208ENST00000564994 PDE4AP27815 886 aa12.81□□□□□ -0.36
VPS39-208ENST00000564994 OAZ1P54368 228 aa12.81□□□□□ -0.36
VPS39-208ENST00000564994 RRP12Q5JTH9 1297 aaKnown RBP12.81□□□□□ -0.36
VPS39-208ENST00000564994 KCTD1Q719H9 257 aa12.81□□□□□ -0.36
VPS39-208ENST00000564994 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.81□□□□□ -0.36
VPS39-208ENST00000564994 TBC1D10CQ8IV04 446 aa12.81□□□□□ -0.36
VPS39-208ENST00000564994 STAG1Q8WVM7 1258 aa12.81□□□□□ -0.36
VPS39-208ENST00000564994 FGD4Q96M96 766 aa12.81□□□□□ -0.36
VPS39-208ENST00000564994 NRBP1Q9UHY1 535 aa12.81□□□□□ -0.36
VPS39-208ENST00000564994 ISY1Q9ULR0 285 aaKnown RBP12.81□□□□□ -0.36
VPS39-208ENST00000564994 LCTP09848 1927 aa12.81□□□□□ -0.36
VPS39-208ENST00000564994 PLA2G6O60733 806 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 ATN1P54259 1190 aaPredicted RBP12.8□□□□□ -0.36
VPS39-208ENST00000564994 SNAP25P60880 206 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 IRX6P78412 446 aaPredicted RBP12.8□□□□□ -0.36
VPS39-208ENST00000564994 LRRC41Q15345 812 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 PPP4R3BQ5MIZ7 849 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 RCSD1Q6JBY9 416 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 CWC27Q6UX04 472 aaKnown RBP12.8□□□□□ -0.36
VPS39-208ENST00000564994 FAM160B2Q86V87 743 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 ARRDC4Q8NCT1 418 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 CHST13Q8NET6 341 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 CHURC1Q8WUH1 139 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 DDX11Q96FC9 970 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 AGBL1Q96MI9 1066 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 TOMM22Q9NS69 142 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 PRR12Q9ULL5 1215 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 MTMR7Q9Y216 660 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 CTDP1Q9Y5B0 961 aaPredicted RBP12.8□□□□□ -0.36
VPS39-208ENST00000564994 LTBP2Q14767 1821 aa12.8□□□□□ -0.36
VPS39-208ENST00000564994 A0A1W2PPC1 479 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 SNAI1O95863 264 aaPredicted RBP12.79□□□□□ -0.36
VPS39-208ENST00000564994 MYCNP04198 464 aaPredicted RBP12.79□□□□□ -0.36
VPS39-208ENST00000564994 FDX1P10109 184 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 BMP8BP34820 402 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 MAGEA10P43363 369 aaPredicted RBP12.79□□□□□ -0.36
VPS39-208ENST00000564994 IKQ13123 557 aaPredicted RBP12.79□□□□□ -0.36
VPS39-208ENST00000564994 AKNAD1Q5T1N1 836 aa12.79□□□□□ -0.36
VPS39-208ENST00000564994 TTBK2Q6IQ55 1244 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms