RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 FAM109BQ6ICB4 259 aaPredicted RBP20.14■□□□□ 0.81
CLN3-211ENST00000564091 PRPF38AQ8NAV1 312 aaKnown RBP20.14■□□□□ 0.81
CLN3-211ENST00000564091 KIFC2Q96AC6 838 aa20.14■□□□□ 0.81
CLN3-211ENST00000564091 DDX11Q96FC9 970 aa20.14■□□□□ 0.81
CLN3-211ENST00000564091 UNC80Q8N2C7 3258 aa20.14■□□□□ 0.81
CLN3-211ENST00000564091 ROBO3Q96MS0 1386 aa20.13■□□□□ 0.81
CLN3-211ENST00000564091 SNAI1O95863 264 aaPredicted RBP20.13■□□□□ 0.81
CLN3-211ENST00000564091 ZFYP08048 801 aaPredicted RBP20.13■□□□□ 0.81
CLN3-211ENST00000564091 ITGB8P26012 769 aa20.13■□□□□ 0.81
CLN3-211ENST00000564091 LRRC47Q8N1G4 583 aaKnown RBP20.13■□□□□ 0.81
CLN3-211ENST00000564091 CEP95Q96GE4 821 aa20.13■□□□□ 0.81
CLN3-211ENST00000564091 SEC62Q99442 399 aaKnown RBP20.13■□□□□ 0.81
CLN3-211ENST00000564091 RAVER2Q9HCJ3 691 aaKnown RBP20.13■□□□□ 0.81
CLN3-211ENST00000564091 A0A1W2PQ45 241 aaPredicted RBP20.12■□□□□ 0.81
CLN3-211ENST00000564091 A0A1W2PQY0 241 aa20.12■□□□□ 0.81
CLN3-211ENST00000564091 PATL2C9JE40 543 aaKnown RBP20.12■□□□□ 0.81
CLN3-211ENST00000564091 ZBED4O75132 1171 aa20.12■□□□□ 0.81
CLN3-211ENST00000564091 GNAT2P19087 354 aa20.12■□□□□ 0.81
CLN3-211ENST00000564091 IFNL3Q8IZI9 196 aa20.12■□□□□ 0.81
CLN3-211ENST00000564091 MKL1Q969V6 931 aa20.12■□□□□ 0.81
CLN3-211ENST00000564091 MTMR4Q9NYA4 1195 aa20.12■□□□□ 0.81
CLN3-211ENST00000564091 ZHX1Q9UKY1 873 aaPredicted RBP20.12■□□□□ 0.81
CLN3-211ENST00000564091 CTDP1Q9Y5B0 961 aaPredicted RBP20.12■□□□□ 0.81
CLN3-211ENST00000564091 TACC3Q9Y6A5 838 aa20.12■□□□□ 0.81
CLN3-211ENST00000564091 DNAJC25-GNG10A0A024R161 153 aa20.11■□□□□ 0.81
CLN3-211ENST00000564091 PQBP1O60828 265 aaKnown RBP20.11■□□□□ 0.81
CLN3-211ENST00000564091 ADAMTS4O75173 837 aa20.11■□□□□ 0.81
CLN3-211ENST00000564091 OTUD7AQ8TE49 926 aaPredicted RBP20.11■□□□□ 0.81
CLN3-211ENST00000564091 SLC38A10Q9HBR0 1119 aa20.11■□□□□ 0.81
CLN3-211ENST00000564091 ZNF287Q9HBT7 754 aa20.11■□□□□ 0.81
CLN3-211ENST00000564091 BAZ2AQ9UIF9 1905 aaKnown RBP20.11■□□□□ 0.81
CLN3-211ENST00000564091 ATP2A1O14983 1001 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 TTLL1O95922 423 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 CLTBP09497 229 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 ZNF697Q5TEC3 545 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 MAMDC4Q6UXC1 1216 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 MSL3Q8N5Y2 521 aaKnown RBP20.1■□□□□ 0.81
CLN3-211ENST00000564091 CHMP4CQ96CF2 233 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 FEM1BQ9UK73 627 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 FAM184BQ9ULE4 1060 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 PCDHB15Q9Y5E8 787 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 CDH23Q9H251 3354 aa20.1■□□□□ 0.81
CLN3-211ENST00000564091 SYNGAP1Q96PV0 1343 aa20.09■□□□□ 0.81
CLN3-211ENST00000564091 SYNRGQ9UMZ2 1314 aa20.09■□□□□ 0.81
CLN3-211ENST00000564091 EPHB4P54760 987 aa20.09■□□□□ 0.81
CLN3-211ENST00000564091 IRX5P78411 483 aaPredicted RBP20.09■□□□□ 0.81
CLN3-211ENST00000564091 SLFN13Q68D06 897 aa20.09■□□□□ 0.81
CLN3-211ENST00000564091 ANKRD35Q8N283 1001 aa20.09■□□□□ 0.81
CLN3-211ENST00000564091 PI4K2BQ8TCG2 481 aa20.09■□□□□ 0.81
CLN3-211ENST00000564091 NACAP1Q9BZK3 213 aa20.09■□□□□ 0.81
CLN3-211ENST00000564091 VCANP13611 3396 aa20.09■□□□□ 0.81
CLN3-211ENST00000564091 MYADML2A6NDP7 307 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 TSPY3P0CV98 308 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 TSPY8P0CW00 308 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 ACLYP53396 1101 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 TFAP4Q01664 338 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 ACVR2BQ13705 512 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 KCNA10Q16322 511 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 LRRFIP1Q32MZ4 808 aaKnown RBP20.08■□□□□ 0.81
CLN3-211ENST00000564091 GMCL1P1Q8NEA9 526 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 KLHDC9Q8NEP7 349 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 NEDD1Q8NHV4 660 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 FGD4Q96M96 766 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 TSEN34Q9BSV6 310 aaKnown RBP20.08■□□□□ 0.81
CLN3-211ENST00000564091 SEMA6BQ9H3T3 888 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 STARD7Q9NQZ5 370 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 TMEM39AQ9NV64 488 aa20.08■□□□□ 0.81
CLN3-211ENST00000564091 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.08■□□□□ 0.81
CLN3-211ENST00000564091 ISY1Q9ULR0 285 aaKnown RBP20.08■□□□□ 0.81
CLN3-211ENST00000564091 FRMPD3Q5JV73 1810 aa20.08■□□□□ 0.8
CLN3-211ENST00000564091 TTC41PQ6P2S7 1318 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 TMEM232C9JQI7 657 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 KIAA0355O15063 1070 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 ERC2O15083 957 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 ADCY6O43306 1168 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 BMP3P12645 472 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 RAG1P15918 1043 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 PDE4BQ07343 736 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 PPARAQ07869 468 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 CCSAPQ6IQ19 270 aaPredicted RBP20.07■□□□□ 0.8
CLN3-211ENST00000564091 ZNF467Q7Z7K2 595 aaPredicted RBP20.07■□□□□ 0.8
CLN3-211ENST00000564091 CDX2Q99626 313 aaPredicted RBP20.07■□□□□ 0.8
CLN3-211ENST00000564091 FSD1Q9BTV5 496 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 NAPBQ9H115 298 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 HOMER2Q9NSB8 354 aa20.07■□□□□ 0.8
CLN3-211ENST00000564091 DUSP11O75319 330 aaKnown RBP20.06■□□□□ 0.8
CLN3-211ENST00000564091 FAAP100Q0VG06 881 aa20.06■□□□□ 0.8
CLN3-211ENST00000564091 ZMYM1Q5SVZ6 1142 aa20.06■□□□□ 0.8
CLN3-211ENST00000564091 CHST13Q8NET6 341 aa20.06■□□□□ 0.8
CLN3-211ENST00000564091 NUP133Q8WUM0 1156 aa20.06■□□□□ 0.8
CLN3-211ENST00000564091 INCENPQ9NQS7 918 aa20.06■□□□□ 0.8
CLN3-211ENST00000564091 FBXO40Q9UH90 709 aa20.06■□□□□ 0.8
CLN3-211ENST00000564091 SYNPO2Q9UMS6 1093 aa20.06■□□□□ 0.8
CLN3-211ENST00000564091 EYSQ5T1H1 3165 aa20.06■□□□□ 0.8
CLN3-211ENST00000564091 MOXD2PA6NHM9 499 aa20.05■□□□□ 0.8
CLN3-211ENST00000564091 SLC3A2P08195 630 aaKnown RBP20.05■□□□□ 0.8
CLN3-211ENST00000564091 C6orf222P0C671 652 aaPredicted RBP20.05■□□□□ 0.8
CLN3-211ENST00000564091 OAZ1P54368 228 aa20.05■□□□□ 0.8
CLN3-211ENST00000564091 SMAD3P84022 425 aaKnown RBP20.05■□□□□ 0.8
CLN3-211ENST00000564091 CCDC144BQ3MJ40 725 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms