RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CTR9Q6PD62 1173 aa14.86□□□□□ -0.03
CLN3-210ENST00000563874 LEKR1Q6ZMV7 388 aa14.86□□□□□ -0.03
CLN3-210ENST00000563874 GPKOWQ92917 476 aaPredicted RBP eCLIP14.86□□□□□ -0.03
CLN3-210ENST00000563874 PSD3Q9NYI0 1048 aa14.86□□□□□ -0.03
CLN3-210ENST00000563874 SCG2P13521 617 aa14.86□□□□□ -0.03
CLN3-210ENST00000563874 TUBB2AQ13885 445 aa14.86□□□□□ -0.03
CLN3-210ENST00000563874 ZNF384Q8TF68 577 aa14.86□□□□□ -0.03
CLN3-210ENST00000563874 MMS19Q96T76 1030 aa14.86□□□□□ -0.03
CLN3-210ENST00000563874 TUBB2BQ9BVA1 445 aa14.86□□□□□ -0.03
CLN3-210ENST00000563874 MYO1CO00159 1063 aa14.85□□□□□ -0.03
CLN3-210ENST00000563874 TNNT3P45378 269 aaPredicted RBP14.85□□□□□ -0.03
CLN3-210ENST00000563874 CCDC122Q5T0U0 273 aa14.85□□□□□ -0.03
CLN3-210ENST00000563874 MTMR7Q9Y216 660 aa14.85□□□□□ -0.03
CLN3-210ENST00000563874 NIP7Q9Y221 180 aaKnown RBP eCLIP14.85□□□□□ -0.03
CLN3-210ENST00000563874 LUC7L2Q9Y383 392 aaKnown RBP14.85□□□□□ -0.03
CLN3-210ENST00000563874 NUP98P52948 1817 aa14.85□□□□□ -0.03
CLN3-210ENST00000563874 CYP2D6P10635 497 aa14.85□□□□□ -0.03
CLN3-210ENST00000563874 OR8K1Q8NGG5 319 aa14.85□□□□□ -0.03
CLN3-210ENST00000563874 PLEKHA4Q9H4M7 779 aa14.85□□□□□ -0.03
CLN3-210ENST00000563874 CWC15Q9P013 229 aaKnown RBP14.85□□□□□ -0.03
CLN3-210ENST00000563874 FAM205AQ6ZU69 1335 aa14.85□□□□□ -0.03
CLN3-210ENST00000563874 DOCK2Q92608 1830 aa14.85□□□□□ -0.03
CLN3-210ENST00000563874 STRCQ7RTU9 1775 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 SKIDA1Q1XH10 827 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 MB21D1Q8N884 522 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 MYO1AQ9UBC5 1043 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 BCL9O00512 1426 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.84□□□□□ -0.03
CLN3-210ENST00000563874 BCL9LQ86UU0 1499 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 KLK7P49862 253 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 HERVK_113P62684 666 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 WDR59Q6PJI9 974 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 GSPT2Q8IYD1 628 aaKnown RBP14.84□□□□□ -0.03
CLN3-210ENST00000563874 CCDC148Q8NFR7 591 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 BAZ2AQ9UIF9 1905 aaKnown RBP14.84□□□□□ -0.03
CLN3-210ENST00000563874 CALM1P0DP23 149 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 CALM2P0DP24 149 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 CALM3P0DP25 149 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 TRIM14Q14142 442 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 TRAPPC11Q7Z392 1133 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 RIN2Q8WYP3 895 aaPredicted RBP14.84□□□□□ -0.03
CLN3-210ENST00000563874 TRIM47Q96LD4 638 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 GBP3Q9H0R5 595 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 FAM204AQ9H8W3 233 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 AGPAT5Q9NUQ2 364 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 JAG2Q9Y219 1238 aa14.84□□□□□ -0.03
CLN3-210ENST00000563874 LRP5O75197 1615 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 B4DLN1 442 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 GPIHBP1Q8IV16 184 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 RMND1Q9NWS8 449 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 SLAIN2Q9P270 581 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 DUSP10Q9Y6W6 482 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 COL1A1P02452 1464 aaPredicted RBP14.83□□□□□ -0.04
CLN3-210ENST00000563874 BCORQ6W2J9 1755 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 ANKRD65E5RJM6 399 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 ZNF185O15231 689 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 DDAH1O94760 285 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 EIF5P55010 431 aaKnown RBP14.83□□□□□ -0.04
CLN3-210ENST00000563874 KIAA1328Q86T90 577 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 ADSSL1Q8N142 457 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 LACRTQ9GZZ8 138 aa14.83□□□□□ -0.04
CLN3-210ENST00000563874 GNL3LQ9NVN8 582 aaKnown RBP14.83□□□□□ -0.04
CLN3-210ENST00000563874 RRP15Q9Y3B9 282 aaKnown RBP14.83□□□□□ -0.04
CLN3-210ENST00000563874 RCCD1A6NED2 376 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 H7C1D1 291 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 TSR1Q2NL82 804 aaKnown RBP14.82□□□□□ -0.04
CLN3-210ENST00000563874 NAALADL2Q58DX5 795 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 SAR1BQ9Y6B6 198 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 LGALS16A8MUM7 142 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 CYP27A1Q02318 531 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 PFKFB3Q16875 520 aaPredicted RBP14.82□□□□□ -0.04
CLN3-210ENST00000563874 C3orf67Q6ZVT6 689 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 SRLQ86TD4 932 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 BRIP1Q9BX63 1249 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 HAUS4Q9H6D7 363 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 DISC1Q9NRI5 854 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 COL4A1P02462 1669 aa14.82□□□□□ -0.04
CLN3-210ENST00000563874 MACROD2A1Z1Q3 448 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 TSPY2A6NKD2 308 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 RNF40O75150 1001 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 KLRK1P26718 216 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 USP14P54578 494 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 TUBB4BP68371 445 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 INTS5Q6P9B9 1019 aaKnown RBP14.81□□□□□ -0.04
CLN3-210ENST00000563874 C4orf32Q8N8J7 132 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 FAM71BQ8TC56 605 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 TMEM60Q9H2L4 133 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 PSMD14O00487 310 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 TRIM21P19474 475 aaKnown RBP14.81□□□□□ -0.04
CLN3-210ENST00000563874 CRKLP46109 303 aaKnown RBP14.81□□□□□ -0.04
CLN3-210ENST00000563874 TYW1BQ6NUM6 668 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 WDR93Q6P2C0 686 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 BLIDQ8IZY5 108 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 STAG2Q8N3U4 1231 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 PCMTD1Q96MG8 357 aaPredicted RBP14.81□□□□□ -0.04
CLN3-210ENST00000563874 DNAJC7Q99615 494 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 RASSF4Q9H2L5 321 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 DUOX1Q9NRD9 1551 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 ANKRD36CQ5JPF3 1778 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 NKRFO15226 690 aaKnown RBP eCLIP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms