RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 FCER1AP12319 257 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 BMP3P12645 472 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 GSPT1P15170 499 aaKnown RBP16.66■□□□□ 0.26
SMPD3-204ENST00000563396 NT5C2P49902 561 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 OAZ1P54368 228 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 SLFN13Q68D06 897 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 DPP9Q86TI2 863 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 STAG1Q8WVM7 1258 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 MAML3Q96JK9 1138 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 INCENPQ9NQS7 918 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 DIAPH3Q9NSV4 1193 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 SLC5A4Q9NY91 659 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 LCTP09848 1927 aa16.66■□□□□ 0.26
SMPD3-204ENST00000563396 H0YGN5 161 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 SLC34A2O95436 690 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 FDX1P10109 184 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 COL6A1P12109 1028 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 CYP2C19P33261 490 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 STAT2P52630 851 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 TTC22Q5TAA0 569 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 SNRNP48Q6IEG0 339 aaKnown RBP16.65■□□□□ 0.26
SMPD3-204ENST00000563396 SAMD1Q6SPF0 538 aaPredicted RBP16.65■□□□□ 0.26
SMPD3-204ENST00000563396 TBC1D10CQ8IV04 446 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 TRPV1Q8NER1 839 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 MMP19Q99542 508 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 TCP11L1Q9NUJ3 509 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 DDX20Q9UHI6 824 aaKnown RBP16.65■□□□□ 0.26
SMPD3-204ENST00000563396 STX8Q9UNK0 236 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 DIS3Q9Y2L1 958 aaKnown RBP16.65■□□□□ 0.26
SMPD3-204ENST00000563396 PFASO15067 1338 aa16.65■□□□□ 0.26
SMPD3-204ENST00000563396 RANBP2P49792 3224 aaKnown RBP16.64■□□□□ 0.25
SMPD3-204ENST00000563396 RANBP6O60518 1105 aaKnown RBP16.64■□□□□ 0.25
SMPD3-204ENST00000563396 NMT2O60551 498 aa16.64■□□□□ 0.25
SMPD3-204ENST00000563396 IRX6P78412 446 aaPredicted RBP16.64■□□□□ 0.25
SMPD3-204ENST00000563396 CWC27Q6UX04 472 aaKnown RBP16.64■□□□□ 0.25
SMPD3-204ENST00000563396 FAM160B2Q86V87 743 aa16.64■□□□□ 0.25
SMPD3-204ENST00000563396 DSCC1Q9BVC3 393 aa16.64■□□□□ 0.25
SMPD3-204ENST00000563396 NRBP1Q9UHY1 535 aa16.64■□□□□ 0.25
SMPD3-204ENST00000563396 RAD50Q92878 1312 aa16.64■□□□□ 0.25
SMPD3-204ENST00000563396 DNAJC25-GNG10A0A024R161 153 aa16.63■□□□□ 0.25
SMPD3-204ENST00000563396 KCTD2Q14681 263 aa16.63■□□□□ 0.25
SMPD3-204ENST00000563396 ZNF792Q3KQV3 632 aa16.63■□□□□ 0.25
SMPD3-204ENST00000563396 AKNAD1Q5T1N1 836 aa16.63■□□□□ 0.25
SMPD3-204ENST00000563396 C11orf49Q9H6J7 331 aa16.63■□□□□ 0.25
SMPD3-204ENST00000563396 RIPK3Q9Y572 518 aa16.63■□□□□ 0.25
SMPD3-204ENST00000563396 NEDD4P46934 1319 aa16.63■□□□□ 0.25
SMPD3-204ENST00000563396 MCM3APO60318 1980 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 SEPT4O43236 478 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 ZBED4O75132 1171 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 SLC1A4P43007 532 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 HAND2P61296 217 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 RASGRP2Q7LDG7 609 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 DCAF4Q8WV16 495 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 DPF3Q92784 378 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 KIFC2Q96AC6 838 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 IL25Q9H293 177 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 RNF41Q9H4P4 317 aaPredicted RBP16.62■□□□□ 0.25
SMPD3-204ENST00000563396 ZNF536O15090 1300 aa16.62■□□□□ 0.25
SMPD3-204ENST00000563396 TMEM232C9JQI7 657 aa16.61■□□□□ 0.25
SMPD3-204ENST00000563396 RRP12Q5JTH9 1297 aaKnown RBP16.61■□□□□ 0.25
SMPD3-204ENST00000563396 RCSD1Q6JBY9 416 aa16.61■□□□□ 0.25
SMPD3-204ENST00000563396 MSL3Q8N5Y2 521 aaKnown RBP16.61■□□□□ 0.25
SMPD3-204ENST00000563396 CHST13Q8NET6 341 aa16.61■□□□□ 0.25
SMPD3-204ENST00000563396 CHURC1Q8WUH1 139 aa16.61■□□□□ 0.25
SMPD3-204ENST00000563396 PRO3102Q9H379 93 aa16.61■□□□□ 0.25
SMPD3-204ENST00000563396 FBXO40Q9UH90 709 aa16.61■□□□□ 0.25
SMPD3-204ENST00000563396 NR2E3Q9Y5X4 410 aa16.61■□□□□ 0.25
SMPD3-204ENST00000563396 LTBP2Q14767 1821 aa16.61■□□□□ 0.25
SMPD3-204ENST00000563396 DNAH12Q6ZR08 3092 aa16.61■□□□□ 0.25
SMPD3-204ENST00000563396 DNM1LO00429 736 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 EVI5O60447 810 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 PGK2P07205 417 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 TOP1P11387 765 aaKnown RBP16.6■□□□□ 0.25
SMPD3-204ENST00000563396 MCCP23508 829 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 HABP4Q5JVS0 413 aaKnown RBP16.6■□□□□ 0.25
SMPD3-204ENST00000563396 MAMDC4Q6UXC1 1216 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 MFSD6Q6ZSS7 791 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 ZNF467Q7Z7K2 595 aaPredicted RBP16.6■□□□□ 0.25
SMPD3-204ENST00000563396 TMEM47Q9BQJ4 181 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 TINF2Q9BSI4 451 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 RAVER2Q9HCJ3 691 aaKnown RBP16.6■□□□□ 0.25
SMPD3-204ENST00000563396 TOMM22Q9NS69 142 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 SYNGAP1Q96PV0 1343 aa16.6■□□□□ 0.25
SMPD3-204ENST00000563396 SNHG28P0DPA3 235 aa16.59■□□□□ 0.25
SMPD3-204ENST00000563396 BTNL9Q6UXG8 535 aa16.59■□□□□ 0.25
SMPD3-204ENST00000563396 KCTD1Q719H9 257 aa16.59■□□□□ 0.25
SMPD3-204ENST00000563396 CPXCR1Q8N123 301 aa16.59■□□□□ 0.25
SMPD3-204ENST00000563396 ESR2Q92731 530 aa16.59■□□□□ 0.25
SMPD3-204ENST00000563396 FGD4Q96M96 766 aa16.59■□□□□ 0.25
SMPD3-204ENST00000563396 TTC14Q96N46 770 aa16.59■□□□□ 0.25
SMPD3-204ENST00000563396 PRR12Q9ULL5 1215 aa16.59■□□□□ 0.25
SMPD3-204ENST00000563396 SMCHD1A6NHR9 2005 aa16.58■□□□□ 0.25
SMPD3-204ENST00000563396 ZNF213O14771 459 aa16.58■□□□□ 0.24
SMPD3-204ENST00000563396 PDHBP11177 359 aa16.58■□□□□ 0.24
SMPD3-204ENST00000563396 CNGA1P29973 690 aa16.58■□□□□ 0.24
SMPD3-204ENST00000563396 TKFCQ3LXA3 575 aa16.58■□□□□ 0.24
SMPD3-204ENST00000563396 RANBP17Q9H2T7 1088 aaKnown RBP16.58■□□□□ 0.24
SMPD3-204ENST00000563396 COLQQ9Y215 455 aaPredicted RBP16.58■□□□□ 0.24
SMPD3-204ENST00000563396 CTDP1Q9Y5B0 961 aaPredicted RBP16.58■□□□□ 0.24
SMPD3-204ENST00000563396 IMMTQ16891 758 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms