RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 INCENPQ9NQS7 918 aa19.94■□□□□ 0.78
CLK3-210ENST00000563112 DDX20Q9UHI6 824 aaKnown RBP19.94■□□□□ 0.78
CLK3-210ENST00000563112 ZMYM6O95789 1325 aa19.94■□□□□ 0.78
CLK3-210ENST00000563112 SLC34A2O95436 690 aa19.93■□□□□ 0.78
CLK3-210ENST00000563112 FDX1P10109 184 aa19.93■□□□□ 0.78
CLK3-210ENST00000563112 SLC4A3P48751 1232 aa19.93■□□□□ 0.78
CLK3-210ENST00000563112 HABP4Q5JVS0 413 aaKnown RBP19.93■□□□□ 0.78
CLK3-210ENST00000563112 CPXCR1Q8N123 301 aa19.93■□□□□ 0.78
CLK3-210ENST00000563112 CHURC1Q8WUH1 139 aa19.93■□□□□ 0.78
CLK3-210ENST00000563112 ZNFX1Q9P2E3 1918 aaKnown RBP19.93■□□□□ 0.78
CLK3-210ENST00000563112 TMEM232C9JQI7 657 aa19.92■□□□□ 0.78
CLK3-210ENST00000563112 ATP2A1O14983 1001 aa19.92■□□□□ 0.78
CLK3-210ENST00000563112 FGRP09769 529 aa19.92■□□□□ 0.78
CLK3-210ENST00000563112 CYBAP13498 195 aa19.92■□□□□ 0.78
CLK3-210ENST00000563112 SLC1A4P43007 532 aa19.92■□□□□ 0.78
CLK3-210ENST00000563112 MNX1P50219 401 aaPredicted RBP19.92■□□□□ 0.78
CLK3-210ENST00000563112 IKQ13123 557 aaPredicted RBP19.92■□□□□ 0.78
CLK3-210ENST00000563112 RRP12Q5JTH9 1297 aaKnown RBP19.92■□□□□ 0.78
CLK3-210ENST00000563112 FAM160B2Q86V87 743 aa19.92■□□□□ 0.78
CLK3-210ENST00000563112 GMCL1Q96IK5 515 aa19.92■□□□□ 0.78
CLK3-210ENST00000563112 MAML3Q96JK9 1138 aa19.92■□□□□ 0.78
CLK3-210ENST00000563112 COLQQ9Y215 455 aaPredicted RBP19.92■□□□□ 0.78
CLK3-210ENST00000563112 IGHA2P01877 340 aa19.91■□□□□ 0.78
CLK3-210ENST00000563112 PCP11498 1178 aaKnown RBP19.91■□□□□ 0.78
CLK3-210ENST00000563112 MCCP23508 829 aa19.91■□□□□ 0.78
CLK3-210ENST00000563112 STAT2P52630 851 aa19.91■□□□□ 0.78
CLK3-210ENST00000563112 IRX6P78412 446 aaPredicted RBP19.91■□□□□ 0.78
CLK3-210ENST00000563112 CWC27Q6UX04 472 aaKnown RBP19.91■□□□□ 0.78
CLK3-210ENST00000563112 DDX11Q96FC9 970 aa19.91■□□□□ 0.78
CLK3-210ENST00000563112 SLC38A10Q9HBR0 1119 aa19.91■□□□□ 0.78
CLK3-210ENST00000563112 IL17RBQ9NRM6 502 aa19.91■□□□□ 0.78
CLK3-210ENST00000563112 DIS3Q9Y2L1 958 aaKnown RBP19.91■□□□□ 0.78
CLK3-210ENST00000563112 NMT2O60551 498 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 PGK2P07205 417 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 OAZ1P54368 228 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 HAND2P61296 217 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 RCSD1Q6JBY9 416 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 MFSD6Q6ZSS7 791 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 TRPV1Q8NER1 839 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 STAG1Q8WVM7 1258 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 RNF41Q9H4P4 317 aaPredicted RBP19.9■□□□□ 0.78
CLK3-210ENST00000563112 RAVER2Q9HCJ3 691 aaKnown RBP19.9■□□□□ 0.78
CLK3-210ENST00000563112 FBXO40Q9UH90 709 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 TACC3Q9Y6A5 838 aa19.9■□□□□ 0.78
CLK3-210ENST00000563112 SEPT4O43236 478 aa19.89■□□□□ 0.77
CLK3-210ENST00000563112 ZNF792Q3KQV3 632 aa19.89■□□□□ 0.77
CLK3-210ENST00000563112 AKNAD1Q5T1N1 836 aa19.89■□□□□ 0.77
CLK3-210ENST00000563112 CHRDL2Q6WN34 429 aa19.89■□□□□ 0.77
CLK3-210ENST00000563112 ARRDC4Q8NCT1 418 aa19.89■□□□□ 0.77
CLK3-210ENST00000563112 TINF2Q9BSI4 451 aa19.89■□□□□ 0.77
CLK3-210ENST00000563112 NRBP1Q9UHY1 535 aa19.89■□□□□ 0.77
CLK3-210ENST00000563112 ZNF213O14771 459 aa19.88■□□□□ 0.77
CLK3-210ENST00000563112 PLA2G6O60733 806 aa19.88■□□□□ 0.77
CLK3-210ENST00000563112 C7orf61Q8IZ16 206 aa19.88■□□□□ 0.77
CLK3-210ENST00000563112 CHST13Q8NET6 341 aa19.88■□□□□ 0.77
CLK3-210ENST00000563112 CHMP4CQ96CF2 233 aa19.88■□□□□ 0.77
CLK3-210ENST00000563112 TCP11L1Q9NUJ3 509 aa19.88■□□□□ 0.77
CLK3-210ENST00000563112 MTMR7Q9Y216 660 aa19.88■□□□□ 0.77
CLK3-210ENST00000563112 RIPK3Q9Y572 518 aa19.88■□□□□ 0.77
CLK3-210ENST00000563112 TRIOBPQ9H2D6 2365 aa19.87■□□□□ 0.77
CLK3-210ENST00000563112 TOP1P11387 765 aaKnown RBP19.87■□□□□ 0.77
CLK3-210ENST00000563112 COL6A1P12109 1028 aa19.87■□□□□ 0.77
CLK3-210ENST00000563112 NOVP48745 357 aa19.87■□□□□ 0.77
CLK3-210ENST00000563112 PRAMEF19Q5SWL8 479 aa19.87■□□□□ 0.77
CLK3-210ENST00000563112 KCTD1Q719H9 257 aa19.87■□□□□ 0.77
CLK3-210ENST00000563112 ANKRD35Q8N283 1001 aa19.87■□□□□ 0.77
CLK3-210ENST00000563112 DCAF4Q8WV16 495 aa19.87■□□□□ 0.77
CLK3-210ENST00000563112 PLXNA1Q9UIW2 1896 aa19.86■□□□□ 0.77
CLK3-210ENST00000563112 PFASO15067 1338 aa19.86■□□□□ 0.77
CLK3-210ENST00000563112 NT5C2P49902 561 aa19.86■□□□□ 0.77
CLK3-210ENST00000563112 CCDC96Q2M329 555 aa19.86■□□□□ 0.77
CLK3-210ENST00000563112 MSL3Q8N5Y2 521 aaKnown RBP19.86■□□□□ 0.77
CLK3-210ENST00000563112 ESR2Q92731 530 aa19.86■□□□□ 0.77
CLK3-210ENST00000563112 CTNNA3Q9UI47 895 aa19.86■□□□□ 0.77
CLK3-210ENST00000563112 CNPY2Q9Y2B0 182 aa19.86■□□□□ 0.77
CLK3-210ENST00000563112 FRMPD3Q5JV73 1810 aa19.86■□□□□ 0.77
CLK3-210ENST00000563112 ALPK3Q96L96 1907 aa19.85■□□□□ 0.77
CLK3-210ENST00000563112 DNM1LO00429 736 aa19.85■□□□□ 0.77
CLK3-210ENST00000563112 PDE4AP27815 886 aa19.85■□□□□ 0.77
CLK3-210ENST00000563112 TKFCQ3LXA3 575 aa19.85■□□□□ 0.77
CLK3-210ENST00000563112 TTC22Q5TAA0 569 aa19.85■□□□□ 0.77
CLK3-210ENST00000563112 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.85■□□□□ 0.77
CLK3-210ENST00000563112 TTC14Q96N46 770 aa19.85■□□□□ 0.77
CLK3-210ENST00000563112 TMEM47Q9BQJ4 181 aa19.85■□□□□ 0.77
CLK3-210ENST00000563112 DSCC1Q9BVC3 393 aa19.85■□□□□ 0.77
CLK3-210ENST00000563112 SENP6Q9GZR1 1112 aaPredicted RBP19.85■□□□□ 0.77
CLK3-210ENST00000563112 KBTBD13C9JR72 458 aa19.84■□□□□ 0.77
CLK3-210ENST00000563112 MYCNP04198 464 aaPredicted RBP19.84■□□□□ 0.77
CLK3-210ENST00000563112 CCDC178Q5BJE1 867 aa19.84■□□□□ 0.77
CLK3-210ENST00000563112 ANO1Q5XXA6 986 aa19.84■□□□□ 0.77
CLK3-210ENST00000563112 TBC1D10CQ8IV04 446 aa19.84■□□□□ 0.77
CLK3-210ENST00000563112 ACAD9Q9H845 621 aa19.84■□□□□ 0.77
CLK3-210ENST00000563112 HOMER2Q9NSB8 354 aa19.84■□□□□ 0.77
CLK3-210ENST00000563112 PRR12Q9ULL5 1215 aa19.84■□□□□ 0.77
CLK3-210ENST00000563112 DNAJC25-GNG10A0A024R161 153 aa19.83■□□□□ 0.77
CLK3-210ENST00000563112 RARBP10826 455 aa19.83■□□□□ 0.77
CLK3-210ENST00000563112 IMMTQ16891 758 aaKnown RBP19.83■□□□□ 0.77
CLK3-210ENST00000563112 GJC2Q5T442 439 aaPredicted RBP19.83■□□□□ 0.77
CLK3-210ENST00000563112 CCDC174Q6PII3 467 aa19.83■□□□□ 0.77
CLK3-210ENST00000563112 ZNF467Q7Z7K2 595 aaPredicted RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms