RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 CHURC1Q8WUH1 139 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 FOXD4L4Q8WXT5 416 aaPredicted RBP16.05■□□□□ 0.16
CLK3-209ENST00000562670 UBA5Q9GZZ9 404 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 RRAGCQ9HB90 399 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 GJB4Q9NTQ9 266 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 VPS54Q9P1Q0 977 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 FEM1BQ9UK73 627 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 LOC285556D6RIA3 1793 aa16.05■□□□□ 0.16
CLK3-209ENST00000562670 hCG_1642624A0A1W2PR95 340 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 POTEIP0CG38 1075 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 POTEJP0CG39 1038 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 KRT2P35908 639 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 FOSBP53539 338 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 TRAF1Q13077 416 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 CSPP1Q1MSJ5 1256 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 SH3D19Q5HYK7 790 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 MCTP1Q6DN14 999 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 ARMC9Q7Z3E5 817 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 NOSTRINQ8IVI9 506 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 PIGSQ96S52 555 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 ZMYND12Q9H0C1 365 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 CPVLQ9H3G5 476 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 AFG3L2Q9Y4W6 797 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 PTPRFP10586 1907 aa16.04■□□□□ 0.16
CLK3-209ENST00000562670 ELP1O95163 1332 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 SPDYE5A6NIY4 337 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 KIF28PB7ZC32 967 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 TMEM232C9JQI7 657 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 PPATQ06203 517 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 MTMR2Q13614 643 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 FAM83BQ5T0W9 1011 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 LDLRAD1Q5T700 205 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 MYSM1Q5VVJ2 828 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 HEATR3Q7Z4Q2 680 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 CCDC84Q86UT8 332 aaPredicted RBP16.03■□□□□ 0.16
CLK3-209ENST00000562670 SPICE1Q8N0Z3 855 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 TNFRSF25Q93038 417 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 ZNF396Q96N95 335 aaPredicted RBP16.03■□□□□ 0.16
CLK3-209ENST00000562670 NUP88Q99567 741 aaPredicted RBP16.03■□□□□ 0.16
CLK3-209ENST00000562670 SCAND2PQ9GZW5 306 aaPredicted RBP16.03■□□□□ 0.16
CLK3-209ENST00000562670 GLT8D2Q9H1C3 349 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 CFAP45Q9UL16 551 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 KCNJ14Q9UNX9 436 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 CLEC11AQ9Y240 323 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 ZHX2Q9Y6X8 837 aa16.03■□□□□ 0.16
CLK3-209ENST00000562670 BAZ2BQ9UIF8 2168 aaKnown RBP16.02■□□□□ 0.16
CLK3-209ENST00000562670 RAD21O60216 631 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 FDX1P10109 184 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 VCAM1P19320 739 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 GNA11P29992 359 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 DNM1Q05193 864 aaKnown RBP16.02■□□□□ 0.16
CLK3-209ENST00000562670 SPP2Q13103 211 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 CDC37Q16543 378 aaPredicted RBP16.02■□□□□ 0.16
CLK3-209ENST00000562670 MAP1SQ66K74 1059 aaPredicted RBP16.02■□□□□ 0.16
CLK3-209ENST00000562670 TYW1BQ6NUM6 668 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 ERO1BQ86YB8 467 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 HOMER1Q86YM7 354 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 GPKOWQ92917 476 aaPredicted RBP eCLIP16.02■□□□□ 0.16
CLK3-209ENST00000562670 RANBP17Q9H2T7 1088 aaKnown RBP16.02■□□□□ 0.16
CLK3-209ENST00000562670 NMRK2Q9NPI5 230 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 EMILIN3Q9NT22 766 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 PNMA2Q9UL42 364 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 PRR12Q9ULL5 1215 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 PCDHA4Q9UN74 947 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 PARP14Q460N5 1801 aa16.02■□□□□ 0.16
CLK3-209ENST00000562670 MYPNQ86TC9 1320 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 BTBD18B2RXH4 712 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 M0R2N6 131 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 SLC16A2P36021 539 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 NAPAP54920 295 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 NLRP5P59047 1200 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 PPIL2Q13356 520 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 GNL2Q13823 731 aaKnown RBP16.01■□□□□ 0.15
CLK3-209ENST00000562670 QRICH1Q2TAL8 776 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 DLK2Q6UY11 383 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 BICD2Q8TD16 824 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 POLR3EQ9NVU0 708 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 FZD1Q9UP38 647 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 KCNH4Q9UQ05 1017 aa16.01■□□□□ 0.15
CLK3-209ENST00000562670 MORC2Q9Y6X9 1032 aaPredicted RBP16.01■□□□□ 0.15
CLK3-209ENST00000562670 CXCL11O14625 94 aa16■□□□□ 0.15
CLK3-209ENST00000562670 PPP1R11O60927 126 aaPredicted RBP16■□□□□ 0.15
CLK3-209ENST00000562670 YEATS4O95619 227 aa16■□□□□ 0.15
CLK3-209ENST00000562670 TRAPPC10P48553 1259 aa16■□□□□ 0.15
CLK3-209ENST00000562670 IKQ13123 557 aaPredicted RBP16■□□□□ 0.15
CLK3-209ENST00000562670 ZYXQ15942 572 aaKnown RBP16■□□□□ 0.15
CLK3-209ENST00000562670 RILPL1Q5EBL4 403 aa16■□□□□ 0.15
CLK3-209ENST00000562670 BLIDQ8IZY5 108 aa16■□□□□ 0.15
CLK3-209ENST00000562670 PRPF38AQ8NAV1 312 aaKnown RBP16■□□□□ 0.15
CLK3-209ENST00000562670 SLF1Q9BQI6 1058 aa16■□□□□ 0.15
CLK3-209ENST00000562670 AMNQ9BXJ7 453 aa16■□□□□ 0.15
CLK3-209ENST00000562670 C6orf50Q9HD87 102 aa16■□□□□ 0.15
CLK3-209ENST00000562670 ISY1Q9ULR0 285 aaKnown RBP16■□□□□ 0.15
CLK3-209ENST00000562670 TRIM75PA6NK02 468 aa15.99■□□□□ 0.15
CLK3-209ENST00000562670 NASPP49321 788 aaPredicted RBP15.99■□□□□ 0.15
CLK3-209ENST00000562670 PRKG1Q13976 671 aa15.99■□□□□ 0.15
CLK3-209ENST00000562670 CHADLQ6NUI6 762 aa15.99■□□□□ 0.15
CLK3-209ENST00000562670 PROCA1Q8NCQ7 364 aaPredicted RBP15.99■□□□□ 0.15
CLK3-209ENST00000562670 PIBF1Q8WXW3 757 aa15.99■□□□□ 0.15
CLK3-209ENST00000562670 VAT1LQ9HCJ6 419 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms