RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 EIF5P55010 431 aaKnown RBP12.74□□□□□ -0.37
CUX1-218ENST00000560541 TMTC3Q6ZXV5 915 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 IQUBQ8NA54 791 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 NELFBQ8WX92 580 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 TNFRSF25Q93038 417 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 CHP1Q99653 195 aa12.74□□□□□ -0.37
CUX1-218ENST00000560541 KRT9P35527 623 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 RCAN1P53805 252 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 ATP2C1P98194 919 aaPredicted RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 JAKMIP3Q5VZ66 844 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 C3orf67Q6ZVT6 689 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 ZNF384Q8TF68 577 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 COL4A1P02462 1669 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 KCNJ18B7U540 433 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 EXOC5O00471 708 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 PPP1R12AO14974 1030 aaPredicted RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 N4BP1O75113 896 aaKnown RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 CYP2D6P10635 497 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 CRKLP46109 303 aaKnown RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 COPB1P53618 953 aaKnown RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 PAK1Q13153 545 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 KCNJ12Q14500 433 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 NAIF1Q69YI7 327 aaPredicted RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 NCAPH2Q6IBW4 605 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 INTS5Q6P9B9 1019 aaKnown RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 CTCFLQ8NI51 663 aaPredicted RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 AK7Q96M32 723 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 ABCB6Q9NP58 842 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 LRP5O75197 1615 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 CNTNAP5Q8WYK1 1306 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 UBXN1Q04323 297 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 PDXDC2PQ6P474 469 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 ZNF513Q8N8E2 541 aaPredicted RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 CEP112Q8N8E3 955 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 RASSF8Q8NHQ8 419 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 GPKOWQ92917 476 aaPredicted RBP eCLIP12.73□□□□□ -0.377e-6■□□□□ 10
CUX1-218ENST00000560541 ANAPC4Q9UJX5 808 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 GUCA1BQ9UMX6 200 aa12.73□□□□□ -0.37
CUX1-218ENST00000560541 COL1A1P02452 1464 aaPredicted RBP12.73□□□□□ -0.37
CUX1-218ENST00000560541 PP2D1A8MPX8 630 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 H0YHG0 523 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 ENC1O14682 589 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 KLRK1P26718 216 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 VSNL1P62760 191 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 SARNPP82979 210 aaKnown RBP12.72□□□□□ -0.37
CUX1-218ENST00000560541 NOA1Q8NC60 698 aaKnown RBP12.72□□□□□ -0.37
CUX1-218ENST00000560541 MTA3Q9BTC8 594 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 CCDC87Q9NVE4 849 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 VPS18Q9P253 973 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 BCORQ6W2J9 1755 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 NEBLO76041 1014 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 NTSR2O95665 410 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 BRD3Q15059 726 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 TCP11X2Q5H9J9 407 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 BEND6Q5SZJ8 279 aaPredicted RBP12.72□□□□□ -0.37
CUX1-218ENST00000560541 MICALL1Q8N3F8 863 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 PIK3R5Q8WYR1 880 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 NAPGQ99747 312 aaPredicted RBP12.72□□□□□ -0.37
CUX1-218ENST00000560541 RBM28Q9NW13 759 aaKnown RBP12.72□□□□□ -0.37
CUX1-218ENST00000560541 ADAM21Q9UKJ8 722 aa12.72□□□□□ -0.37
CUX1-218ENST00000560541 TTF2Q9UNY4 1162 aaKnown RBP12.72□□□□□ -0.37
CUX1-218ENST00000560541 PHACTR2O75167 634 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 CAMTA2O94983 1202 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 ARHGAP25P42331 645 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 PRCPP42785 496 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 RBM5P52756 815 aaKnown RBP eCLIP12.71□□□□□ -0.37
CUX1-218ENST00000560541 LEKR1Q6ZMV7 388 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 MMS22LQ6ZRQ5 1243 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 BORCS6Q96GS4 357 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 ARAP2Q8WZ64 1704 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 BMP15O95972 392 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 RPN1P04843 607 aaKnown RBP12.71□□□□□ -0.37
CUX1-218ENST00000560541 SCG2P13521 617 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 PPP2R5BQ15173 497 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 MAP9Q49MG5 647 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 BICDL1Q6ZP65 573 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 SMIM5Q71RC9 77 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 TMTC1Q8IUR5 882 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 PPM1EQ8WY54 764 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 HDAC6Q9UBN7 1215 aa12.71□□□□□ -0.37
CUX1-218ENST00000560541 LIMA1Q9UHB6 759 aaKnown RBP12.71□□□□□ -0.37
CUX1-218ENST00000560541 CICQ96RK0 1608 aaPredicted RBP12.71□□□□□ -0.38
CUX1-218ENST00000560541 CTAGE15A4D2H0 777 aa12.71□□□□□ -0.38
CUX1-218ENST00000560541 CTAGE8P0CG41 777 aa12.71□□□□□ -0.38
CUX1-218ENST00000560541 PMS1P54277 932 aaKnown RBP12.71□□□□□ -0.38
CUX1-218ENST00000560541 CYP26C1Q6V0L0 522 aa12.71□□□□□ -0.38
CUX1-218ENST00000560541 CTAGE6Q86UF2 777 aa12.71□□□□□ -0.38
CUX1-218ENST00000560541 CTAGE4Q8IX94 777 aa12.71□□□□□ -0.38
CUX1-218ENST00000560541 GNL3LQ9NVN8 582 aaKnown RBP12.71□□□□□ -0.38
CUX1-218ENST00000560541 RWDD2AQ9UIY3 292 aa12.71□□□□□ -0.38
CUX1-218ENST00000560541 FAM205AQ6ZU69 1335 aa12.71□□□□□ -0.38
CUX1-218ENST00000560541 MAP2K7O14733 419 aa12.7□□□□□ -0.38
CUX1-218ENST00000560541 SEMA3EO15041 775 aa12.7□□□□□ -0.38
CUX1-218ENST00000560541 GTPBP6O43824 516 aaPredicted RBP12.7□□□□□ -0.38
CUX1-218ENST00000560541 PDE6BP35913 854 aa12.7□□□□□ -0.38
CUX1-218ENST00000560541 STAT6P42226 847 aa12.7□□□□□ -0.38
CUX1-218ENST00000560541 ZNF335Q9H4Z2 1342 aaPredicted RBP12.7□□□□□ -0.38
CUX1-218ENST00000560541 TTC26A0AVF1 554 aa12.7□□□□□ -0.38
CUX1-218ENST00000560541 ACTN2P35609 894 aa12.7□□□□□ -0.38
CUX1-218ENST00000560541 ITIH6Q6UXX5 1313 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms