RNA–Protein interactions for RNA: ENST00000560402.1

SMAD3-214, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-214ENST00000560402 RNF180Q86T96 592 aa16.14■□□□□ 0.17
SMAD3-214ENST00000560402 ZNF444Q8N0Y2 327 aaPredicted RBP16.14■□□□□ 0.17
SMAD3-214ENST00000560402 DEFB123Q8N688 67 aa16.14■□□□□ 0.17
SMAD3-214ENST00000560402 GMCL1P1Q8NEA9 526 aa16.14■□□□□ 0.17
SMAD3-214ENST00000560402 XPNPEP3Q9NQH7 507 aa16.14■□□□□ 0.17
SMAD3-214ENST00000560402 CNPY2Q9Y2B0 182 aa16.14■□□□□ 0.17
SMAD3-214ENST00000560402 ATP11BQ9Y2G3 1177 aa16.14■□□□□ 0.17
SMAD3-214ENST00000560402 CTDP1Q9Y5B0 961 aaPredicted RBP16.14■□□□□ 0.17
SMAD3-214ENST00000560402 SYNGAP1Q96PV0 1343 aa16.14■□□□□ 0.17
SMAD3-214ENST00000560402 PATL2C9JE40 543 aaKnown RBP16.13■□□□□ 0.17
SMAD3-214ENST00000560402 TTLL1O95922 423 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 APPP05067 770 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 PGK2P07205 417 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 FDX1P10109 184 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 OAZ1P54368 228 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 IFNL3Q8IZI9 196 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 PI4K2BQ8TCG2 481 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 MKL1Q969V6 931 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 CEP95Q96GE4 821 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 NUP88Q99567 741 aaPredicted RBP16.13■□□□□ 0.17
SMAD3-214ENST00000560402 FSD1Q9BTV5 496 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 MTMR4Q9NYA4 1195 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 FBXO40Q9UH90 709 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 FEM1BQ9UK73 627 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 PHF24Q9UPV7 400 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 COL6A3P12111 3177 aa16.13■□□□□ 0.17
SMAD3-214ENST00000560402 ZBED4O75132 1171 aa16.12■□□□□ 0.17
SMAD3-214ENST00000560402 MX1P20591 662 aa16.12■□□□□ 0.17
SMAD3-214ENST00000560402 PRAMEF19Q5SWL8 479 aa16.12■□□□□ 0.17
SMAD3-214ENST00000560402 ZNF467Q7Z7K2 595 aaPredicted RBP16.12■□□□□ 0.17
SMAD3-214ENST00000560402 STK11IPQ8N1F8 1099 aa16.12■□□□□ 0.17
SMAD3-214ENST00000560402 NAPBQ9H115 298 aa16.12■□□□□ 0.17
SMAD3-214ENST00000560402 CLIP2Q9UDT6 1046 aa16.12■□□□□ 0.17
SMAD3-214ENST00000560402 MCM3APO60318 1980 aa16.12■□□□□ 0.17
SMAD3-214ENST00000560402 DNAJC25-GNG10A0A024R161 153 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 MYCNP04198 464 aaPredicted RBP16.11■□□□□ 0.17
SMAD3-214ENST00000560402 TSPY3P0CV98 308 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 TSPY8P0CW00 308 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 ADCYAP1R1P41586 468 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 TRIM60Q495X7 471 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 ZMYM1Q5SVZ6 1142 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 MAMDC4Q6UXC1 1216 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 NEDD1Q8NHV4 660 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 DDX11Q96FC9 970 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 SLC38A10Q9HBR0 1119 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 PDLIM7Q9NR12 457 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 STXBP5LQ9Y2K9 1186 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 LRRC37A2A6NM11 1700 aa16.11■□□□□ 0.17
SMAD3-214ENST00000560402 PRDM1O75626 825 aa16.1■□□□□ 0.17
SMAD3-214ENST00000560402 ZNF865P0CJ78 1059 aaPredicted RBP16.1■□□□□ 0.17
SMAD3-214ENST00000560402 PPARAQ07869 468 aa16.1■□□□□ 0.17
SMAD3-214ENST00000560402 FAM109BQ6ICB4 259 aaPredicted RBP16.1■□□□□ 0.17
SMAD3-214ENST00000560402 CHST13Q8NET6 341 aa16.1■□□□□ 0.17
SMAD3-214ENST00000560402 KIFC2Q96AC6 838 aa16.1■□□□□ 0.17
SMAD3-214ENST00000560402 TSEN34Q9BSV6 310 aaKnown RBP16.1■□□□□ 0.17
SMAD3-214ENST00000560402 PRDM5Q9NQX1 630 aaPredicted RBP16.1■□□□□ 0.17
SMAD3-214ENST00000560402 ZBTB47Q9UFB7 747 aaPredicted RBP16.1■□□□□ 0.17
SMAD3-214ENST00000560402 PCDHB15Q9Y5E8 787 aa16.1■□□□□ 0.17
SMAD3-214ENST00000560402 BMP3P12645 472 aa16.09■□□□□ 0.17
SMAD3-214ENST00000560402 STAT2P52630 851 aa16.09■□□□□ 0.17
SMAD3-214ENST00000560402 FAM160B2Q86V87 743 aa16.09■□□□□ 0.17
SMAD3-214ENST00000560402 LRRC47Q8N1G4 583 aaKnown RBP16.09■□□□□ 0.17
SMAD3-214ENST00000560402 GMCL1Q96IK5 515 aa16.09■□□□□ 0.17
SMAD3-214ENST00000560402 MTMR10Q9NXD2 777 aa16.09■□□□□ 0.17
SMAD3-214ENST00000560402 FAM184BQ9ULE4 1060 aa16.09■□□□□ 0.17
SMAD3-214ENST00000560402 SALL3Q9BXA9 1300 aa16.09■□□□□ 0.17
SMAD3-214ENST00000560402 A0A1W2PQ45 241 aaPredicted RBP16.08■□□□□ 0.16
SMAD3-214ENST00000560402 A0A1W2PQY0 241 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 MOXD2PA6NHM9 499 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 ADAMTS4O75173 837 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 PGK1P00558 417 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 TAL1P17542 331 aaPredicted RBP16.08■□□□□ 0.16
SMAD3-214ENST00000560402 SLFN13Q68D06 897 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 Q7L0L9 218 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 CPXCR1Q8N123 301 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 SLC17A8Q8NDX2 589 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 FERMT2Q96AC1 680 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 SEC62Q99442 399 aaKnown RBP16.08■□□□□ 0.16
SMAD3-214ENST00000560402 RIPK3Q9Y572 518 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 SYNRGQ9UMZ2 1314 aa16.08■□□□□ 0.16
SMAD3-214ENST00000560402 PLA2G6O60733 806 aa16.07■□□□□ 0.16
SMAD3-214ENST00000560402 CLTBP09497 229 aa16.07■□□□□ 0.16
SMAD3-214ENST00000560402 CST5P28325 142 aaPredicted RBP16.07■□□□□ 0.16
SMAD3-214ENST00000560402 TICAM2Q86XR7 235 aa16.07■□□□□ 0.16
SMAD3-214ENST00000560402 ANKRD35Q8N283 1001 aa16.07■□□□□ 0.16
SMAD3-214ENST00000560402 CHURC1Q8WUH1 139 aa16.07■□□□□ 0.16
SMAD3-214ENST00000560402 NUP133Q8WUM0 1156 aa16.07■□□□□ 0.16
SMAD3-214ENST00000560402 ABHD16BQ9H3Z7 469 aa16.07■□□□□ 0.16
SMAD3-214ENST00000560402 RAVER2Q9HCJ3 691 aaKnown RBP16.07■□□□□ 0.16
SMAD3-214ENST00000560402 ZHX1Q9UKY1 873 aaPredicted RBP16.07■□□□□ 0.16
SMAD3-214ENST00000560402 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.07■□□□□ 0.16
SMAD3-214ENST00000560402 RBM19Q9Y4C8 960 aaKnown RBP16.07■□□□□ 0.16
SMAD3-214ENST00000560402 TACC3Q9Y6A5 838 aa16.07■□□□□ 0.16
SMAD3-214ENST00000560402 LAMA2P24043 3122 aaKnown RBP16.07■□□□□ 0.16
SMAD3-214ENST00000560402 MROH7Q68CQ1 1323 aa16.06■□□□□ 0.16
SMAD3-214ENST00000560402 TSPY2A6NKD2 308 aa16.06■□□□□ 0.16
SMAD3-214ENST00000560402 DUSP11O75319 330 aaKnown RBP16.06■□□□□ 0.16
SMAD3-214ENST00000560402 SNAI1O95863 264 aaPredicted RBP16.06■□□□□ 0.16
SMAD3-214ENST00000560402 SLC1A4P43007 532 aa16.06■□□□□ 0.16
SMAD3-214ENST00000560402 TFAP4Q01664 338 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms