RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 BARHL2Q9NY43 387 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 ZHX2Q9Y6X8 837 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 PNMA6FA0A0J9YX94 578 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 DDX11L8A8MPP1 907 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 U2AF2P26368 475 aaKnown RBP eCLIP12.93□□□□□ -0.349e-9■■□□□ 12.1
USP3-218ENST00000560202 NLRP5P59047 1200 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 IKQ13123 557 aaPredicted RBP12.93□□□□□ -0.34
USP3-218ENST00000560202 GNL2Q13823 731 aaKnown RBP12.93□□□□□ -0.34
USP3-218ENST00000560202 VGLL4Q14135 290 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 L1TD1Q5T7N2 865 aaKnown RBP12.93□□□□□ -0.34
USP3-218ENST00000560202 LDHDQ86WU2 507 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 ZNF280CQ8ND82 737 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 LPAR1Q92633 364 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 NMRK2Q9NPI5 230 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.93□□□□□ -0.34
USP3-218ENST00000560202 CNPY2Q9Y2B0 182 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 SNCAIPQ9Y6H5 919 aa12.93□□□□□ -0.34
USP3-218ENST00000560202 ATAD5Q96QE3 1844 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 BTBD18B2RXH4 712 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 STXBP3O00186 592 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 ZBTB5O15062 677 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 NCLP19338 710 aaKnown RBP12.92□□□□□ -0.34
USP3-218ENST00000560202 USP14P54578 494 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 BACE1P56817 501 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 MTMR2Q13614 643 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 TTLL12Q14166 644 aaPredicted RBP12.92□□□□□ -0.34
USP3-218ENST00000560202 MAP3K11Q16584 847 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 SYDE2Q5VT97 1194 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 TYW1BQ6NUM6 668 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 FAM177A1Q8N128 213 aaPredicted RBP12.92□□□□□ -0.34
USP3-218ENST00000560202 ZNF526Q8TF50 670 aaPredicted RBP12.92□□□□□ -0.34
USP3-218ENST00000560202 FOXP1Q9H334 677 aaPredicted RBP12.92□□□□□ -0.34
USP3-218ENST00000560202 CSADQ9Y600 493 aa12.92□□□□□ -0.34
USP3-218ENST00000560202 DOCK1Q14185 1865 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 TRIM75PA6NK02 468 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 hCG_1984214I3L0E3 225 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 TRAF5O00463 557 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 WDR46O15213 610 aaKnown RBP12.91□□□□□ -0.34
USP3-218ENST00000560202 PLA2G6O60733 806 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 CALML3P27482 149 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 KRT2P35908 639 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 STAT2P52630 851 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 KRT85P78386 507 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 NPY5RQ15761 445 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 MOB2Q70IA6 237 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 ANKRD13AQ8IZ07 590 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 ZNF713Q8N859 430 aaPredicted RBP12.91□□□□□ -0.34
USP3-218ENST00000560202 CCDC148Q8NFR7 591 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 OXER1Q8TDS5 423 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 CCDC12Q8WUD4 166 aaPredicted RBP12.91□□□□□ -0.34
USP3-218ENST00000560202 CHURC1Q8WUH1 139 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 BRMS1Q9HCU9 246 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 EMILIN3Q9NT22 766 aa12.91□□□□□ -0.34
USP3-218ENST00000560202 C19orf81C9J6K1 198 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 PPP1R11O60927 126 aaPredicted RBP12.9□□□□□ -0.34
USP3-218ENST00000560202 NAPAP54920 295 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 NR5A1Q13285 461 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 DGKZQ13574 1117 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 CDC37Q16543 378 aaPredicted RBP12.9□□□□□ -0.34
USP3-218ENST00000560202 MYSM1Q5VVJ2 828 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 ATL3Q6DD88 541 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 GALNT17Q6IS24 598 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 ARMC9Q7Z3E5 817 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 FAM160B2Q86V87 743 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 NOSTRINQ8IVI9 506 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 ZNF396Q96N95 335 aaPredicted RBP12.9□□□□□ -0.34
USP3-218ENST00000560202 GDPD2Q9HCC8 539 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 TFIP11Q9UBB9 837 aaKnown RBP12.9□□□□□ -0.34
USP3-218ENST00000560202 FEM1BQ9UK73 627 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 CFAP45Q9UL16 551 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 PRR12Q9ULL5 1215 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 AFG3L2Q9Y4W6 797 aa12.9□□□□□ -0.34
USP3-218ENST00000560202 FIBPO43427 364 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 PRPF40AO75400 957 aaKnown RBP12.89□□□□□ -0.35
USP3-218ENST00000560202 PTMSP20962 102 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 QRICH1Q2TAL8 776 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 COA7Q96BR5 231 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 LMBRD1Q9NUN5 540 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 PCDHA4Q9UN74 947 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 VCAM1P19320 739 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 SNAP25P60880 206 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 FMR1Q06787 632 aaKnown RBP eCLIP12.89□□□□□ -0.35
USP3-218ENST00000560202 CSPP1Q1MSJ5 1256 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 PPP1R18Q6NYC8 613 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 BLIDQ8IZY5 108 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 TMEM87AQ8NBN3 555 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 DAGLBQ8NCG7 672 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 RBM46Q8TBY0 533 aaKnown RBP12.89□□□□□ -0.35
USP3-218ENST00000560202 CLMNQ96JQ2 1002 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 C12orf42Q96LP6 360 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 USP28Q96RU2 1077 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 SCAND2PQ9GZW5 306 aaPredicted RBP12.89□□□□□ -0.35
USP3-218ENST00000560202 ZMYND12Q9H0C1 365 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 ZNF408Q9H9D4 720 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 ELP3Q9H9T3 547 aa12.89□□□□□ -0.35
USP3-218ENST00000560202 BAZ2BQ9UIF8 2168 aaKnown RBP12.89□□□□□ -0.35
USP3-218ENST00000560202 MYH6P13533 1939 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 ESYT2A0FGR8 921 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 SMCO2A6NFE2 343 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 ADAMTS3O15072 1205 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms