RNA–Protein interactions for RNA: ENST00000559989.1

CSPG4P12-202, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 12, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P12, Length 7,790 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P12-202ENST00000559989 APOA1P02647 267 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 NBPF14Q5TI25 921 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 CREB3L3Q68CJ9 461 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 NUDT16Q96DE0 195 aaKnown RBP15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 TTC25Q96NG3 672 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 STRIP2Q9ULQ0 834 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 SNX5Q9Y5X3 404 aa15.12■□□□□ 0.01
CSPG4P12-202ENST00000559989 H0YC42 278 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 PDE6CP51160 858 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 IFT88Q13099 833 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 LONRF3Q496Y0 759 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 TMEM259Q4ZIN3 620 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 DACH2Q96NX9 599 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 EIF3DO15371 548 aaKnown RBP eCLIP15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 AK2P54819 239 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 HOOK2Q96ED9 719 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 TTC21BQ7Z4L5 1316 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 ABL1P00519 1130 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 RRAGAQ7L523 313 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 RNF113AO15541 343 aaKnown RBP15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 IL15P40933 162 aaPredicted RBP15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 BFSP1Q12934 665 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 ACBD5Q5T8D3 534 aaPredicted RBP15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 MAEAQ7L5Y9 396 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 RMDN2Q96LZ7 410 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 FBXO2Q9UK22 296 aaPredicted RBP15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 KDM3AQ9Y4C1 1321 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 SNRPA1P09661 255 aaKnown RBP15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 PDE1BQ01064 536 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 TTC19Q6DKK2 380 aaPredicted RBP15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 ATP6V0A4Q9HBG4 840 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 TTC41PQ6P2S7 1318 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 LDHBP07195 334 aaKnown RBP15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 POSTNQ15063 836 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 PHKBQ93100 1093 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 ZFYVE1Q9HBF4 777 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 MAPK8IP1Q9UQF2 711 aa15.11■□□□□ 0.01
CSPG4P12-202ENST00000559989 MAP3K10Q02779 954 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 TTBK2Q6IQ55 1244 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 PATL1Q86TB9 770 aaKnown RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 SLF1Q9BQI6 1058 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 ST7Q9NRC1 585 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 CCDC85BQ15834 202 aaPredicted RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 LLPHQ9BRT6 129 aaKnown RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 RASGRF2O14827 1237 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 ARHGEF18Q6ZSZ5 1173 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 C2CD5Q86YS7 1000 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 U2AF1L4Q8WU68 220 aaKnown RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 NAF1Q96HR8 494 aaKnown RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 ACTR5Q9H9F9 607 aaPredicted RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 SGK1O00141 431 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 MYSM1Q5VVJ2 828 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 NLRP3Q96P20 1036 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 ING2Q9H160 280 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 TRIM45Q9H8W5 580 aaPredicted RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 MTX1Q13505 466 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 CHST3Q7LGC8 479 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 MRPL40Q9NQ50 206 aaKnown RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 POC1B-GALNT4F8VUJ3 575 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 CHEK2O96017 543 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 CCT5P48643 541 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 KAZNQ674X7 775 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 CAPN12Q6ZSI9 719 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 NBNO60934 754 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 TNNC2P02585 160 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 HDAC1Q13547 482 aaPredicted RBP15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 ANO1Q5XXA6 986 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 KLC3Q6P597 504 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 SLC52A1Q9NWF4 448 aa15.1■□□□□ 0.01
CSPG4P12-202ENST00000559989 ENOX1Q8TC92 643 aaKnown RBP15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 SYTL2Q9HCH5 934 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 LRRC9Q6ZRR7 1453 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 FAM133BQ5BKY9 247 aaKnown RBP15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 CACTINQ8WUQ7 758 aaKnown RBP15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 TCP11Q8WWU5 503 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 MTBPQ96DY7 904 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 GPCPD1Q9NPB8 672 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 ZNF212Q9UDV6 495 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 EFCAB8A8MWE9 144 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 ANKRD13DQ6ZTN6 518 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 STMN3Q9NZ72 180 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 MYCLP12524 364 aaPredicted RBP15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 POLD1P28340 1107 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 SERPINB10P48595 397 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 KRT33BQ14525 404 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 MCUQ8NE86 351 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 GINS2Q9Y248 185 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 NSFP46459 744 aaKnown RBP15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 YWHAGP61981 247 aaKnown RBP eCLIP15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 E2F5Q15329 346 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 HERC4Q5GLZ8 1057 aaPredicted RBP15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 MYLK4Q86YV6 388 aaPredicted RBP15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 USHBP1Q8N6Y0 703 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 TCEANC2Q96MN5 208 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 POLKQ9UBT6 870 aa15.09■□□□□ 0.01
CSPG4P12-202ENST00000559989 CPP00450 1065 aa15.08■□□□□ 0.01
CSPG4P12-202ENST00000559989 PI4KAP2A4QPH2 592 aa15.08■□□□□ 0
CSPG4P12-202ENST00000559989 PRR23D1E9PI22 279 aaPredicted RBP15.08■□□□□ 0
CSPG4P12-202ENST00000559989 PRR23D2P0DMB1 279 aaPredicted RBP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms