RNA–Protein interactions for RNA: ENST00000558861.1

LRRC28-209, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 744 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-209ENST00000558861 COL16A1Q07092 1604 aaPredicted RBP8.26□□□□□ -1.09
LRRC28-209ENST00000558861 NHSL1Q5SYE7 1610 aa8.26□□□□□ -1.09
LRRC28-209ENST00000558861 C1QTNF9BB2RNN3 333 aa8.26□□□□□ -1.09
LRRC28-209ENST00000558861 RNGTTO60942 597 aaKnown RBP8.26□□□□□ -1.09
LRRC28-209ENST00000558861 SGO2Q562F6 1265 aa8.26□□□□□ -1.09
LRRC28-209ENST00000558861 LSRQ86X29 649 aaPredicted RBP8.26□□□□□ -1.09
LRRC28-209ENST00000558861 FAM169BQ8N8A8 192 aa8.26□□□□□ -1.09
LRRC28-209ENST00000558861 DDX17Q92841 729 aaKnown RBP8.26□□□□□ -1.09
LRRC28-209ENST00000558861 ACSF2Q96CM8 615 aaPredicted RBP8.26□□□□□ -1.09
LRRC28-209ENST00000558861 DNAJC2Q99543 621 aaKnown RBP8.26□□□□□ -1.09
LRRC28-209ENST00000558861 KLHL3Q9UH77 587 aa8.26□□□□□ -1.09
LRRC28-209ENST00000558861 CPSF1Q10570 1443 aaKnown RBP8.26□□□□□ -1.09
LRRC28-209ENST00000558861 SSH2Q76I76 1423 aa8.26□□□□□ -1.09
LRRC28-209ENST00000558861 HSPA1LP34931 641 aa8.25□□□□□ -1.09
LRRC28-209ENST00000558861 ETFBP38117 255 aa8.25□□□□□ -1.09
LRRC28-209ENST00000558861 EIF6P56537 245 aaKnown RBP8.25□□□□□ -1.09
LRRC28-209ENST00000558861 NKG7Q16617 165 aa8.25□□□□□ -1.09
LRRC28-209ENST00000558861 OVOS1Q6IE37 1185 aa8.25□□□□□ -1.09
LRRC28-209ENST00000558861 CDPF1Q6NVV7 123 aa8.25□□□□□ -1.09
LRRC28-209ENST00000558861 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.25□□□□□ -1.09
LRRC28-209ENST00000558861 DZIP1LQ8IYY4 767 aaKnown RBP8.25□□□□□ -1.09
LRRC28-209ENST00000558861 UTP4Q969X6 686 aaKnown RBP8.25□□□□□ -1.09
LRRC28-209ENST00000558861 TJP2Q9UDY2 1190 aa8.25□□□□□ -1.09
LRRC28-209ENST00000558861 ADAM30Q9UKF2 790 aa8.25□□□□□ -1.09
LRRC28-209ENST00000558861 RGPD8O14715 1765 aaPredicted RBP8.25□□□□□ -1.09
LRRC28-209ENST00000558861 PPIP5K1Q6PFW1 1433 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 STK10O94804 968 aaKnown RBP8.24□□□□□ -1.09
LRRC28-209ENST00000558861 IMPDH2P12268 514 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 ZEB1P37275 1124 aaPredicted RBP8.24□□□□□ -1.09
LRRC28-209ENST00000558861 GIPRP48546 466 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 GSK3AP49840 483 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 USP11P51784 963 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 TMEM201Q5SNT2 666 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 SMYD4Q8IYR2 804 aaPredicted RBP8.24□□□□□ -1.09
LRRC28-209ENST00000558861 ARMC10Q8N2F6 343 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 ZNF507Q8TCN5 953 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 FBLIM1Q8WUP2 373 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 TMEM40Q8WWA1 233 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 CRBNQ96SW2 442 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 DPH2Q9BQC3 489 aaPredicted RBP8.24□□□□□ -1.09
LRRC28-209ENST00000558861 ACSS3Q9H6R3 686 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 GMIPQ9P107 970 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 KIF1AQ12756 1690 aa8.24□□□□□ -1.09
LRRC28-209ENST00000558861 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.23□□□□□ -1.09
LRRC28-209ENST00000558861 MEIS3P2A8K0S8 358 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 TMF1P82094 1093 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 UVSSAQ2YD98 709 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 RUFY4Q6ZNE9 571 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 HID1Q8IV36 788 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 PMFBP1Q8TBY8 1022 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 ARMC5Q96C12 935 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 TMEM87BQ96K49 555 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 MYRFLQ96LU7 910 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 SLC12A5Q9H2X9 1139 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 SEMA6CQ9H3T2 930 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 DAGLAQ9Y4D2 1042 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 ACEP12821 1306 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 NPHP3Q7Z494 1330 aa8.23□□□□□ -1.09
LRRC28-209ENST00000558861 TRPM3Q9HCF6 1732 aaPredicted RBP8.23□□□□□ -1.09
LRRC28-209ENST00000558861 SBNO1A3KN83 1393 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 NINLQ9Y2I6 1382 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 USP6P35125 1406 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 SLC22A31A6NKX4 558 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 UPK3BL1B0FP48 263 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 CHURC1-FNTBB4DL54 471 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 UPK3BL2E5RIL1 263 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 SMAD7O15105 426 aaKnown RBP8.22□□□□□ -1.09
LRRC28-209ENST00000558861 BMP3P12645 472 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 RASSF7Q02833 373 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 SLBPQ14493 270 aaKnown RBP eCLIP8.22□□□□□ -1.09
LRRC28-209ENST00000558861 CDC37L1Q7L3B6 337 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.22□□□□□ -1.09
LRRC28-209ENST00000558861 RBBP8NLQ8NC74 664 aaPredicted RBP8.22□□□□□ -1.09
LRRC28-209ENST00000558861 FAM13CQ8NE31 585 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 SSBP4Q9BWG4 385 aaPredicted RBP8.22□□□□□ -1.09
LRRC28-209ENST00000558861 LGR6Q9HBX8 967 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 SSU72Q9NP77 194 aaKnown RBP8.22□□□□□ -1.09
LRRC28-209ENST00000558861 KIF7Q2M1P5 1343 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 WASHC2AQ641Q2 1341 aa8.22□□□□□ -1.09
LRRC28-209ENST00000558861 MYOM1P52179 1685 aa8.21□□□□□ -1.09
LRRC28-209ENST00000558861 DYNC1LI2O43237 492 aaPredicted RBP8.21□□□□□ -1.1
LRRC28-209ENST00000558861 NFICP08651 508 aa8.21□□□□□ -1.1
LRRC28-209ENST00000558861 KCNMA1Q12791 1236 aa8.21□□□□□ -1.1
LRRC28-209ENST00000558861 ARSHQ5FYA8 562 aa8.21□□□□□ -1.1
LRRC28-209ENST00000558861 PRAMEF13Q5VWM6 474 aa8.21□□□□□ -1.1
LRRC28-209ENST00000558861 MCATQ8IVS2 390 aaKnown RBP8.21□□□□□ -1.1
LRRC28-209ENST00000558861 MRPL41Q8IXM3 137 aaKnown RBP8.21□□□□□ -1.1
LRRC28-209ENST00000558861 HNRNPLLQ8WVV9 542 aaKnown RBP8.21□□□□□ -1.1
LRRC28-209ENST00000558861 ATG4CQ96DT6 458 aa8.21□□□□□ -1.1
LRRC28-209ENST00000558861 SPATA31A3Q5VYP0 1347 aa8.21□□□□□ -1.1
LRRC28-209ENST00000558861 A0A1W2PP64 1363 aa8.21□□□□□ -1.1
LRRC28-209ENST00000558861 PNPLA6Q8IY17 1366 aa8.21□□□□□ -1.1
LRRC28-209ENST00000558861 CCDC7Q96M83 1385 aa8.21□□□□□ -1.1
LRRC28-209ENST00000558861 ITSN1Q15811 1721 aa8.2□□□□□ -1.1
LRRC28-209ENST00000558861 NRKQ7Z2Y5 1582 aa8.2□□□□□ -1.1
LRRC28-209ENST00000558861 MAP4P27816 1152 aaKnown RBP8.2□□□□□ -1.1
LRRC28-209ENST00000558861 RXRBP28702 533 aa8.2□□□□□ -1.1
LRRC28-209ENST00000558861 LRRFIP1Q32MZ4 808 aaKnown RBP8.2□□□□□ -1.1
LRRC28-209ENST00000558861 ANKS3Q6ZW76 656 aa8.2□□□□□ -1.1
LRRC28-209ENST00000558861 NLRC3Q7RTR2 1065 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms