RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 UBA5Q9GZZ9 404 aa11.18□□□□□ -0.62
CUX1-216ENST00000558469 CPVLQ9H3G5 476 aa11.18□□□□□ -0.62
CUX1-216ENST00000558469 SMCHD1A6NHR9 2005 aa11.18□□□□□ -0.62
CUX1-216ENST00000558469 CCL15-CCL14A0A0B4J2E2 113 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 RASSF10A6NK89 507 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 DTNBO60941 627 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 PPFIA3O75145 1194 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 GNAQP50148 359 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 STAT2P52630 851 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 ST3GAL1Q11201 340 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 MOGSQ13724 837 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 CCL15Q16663 113 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 TMTC3Q6ZXV5 915 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 NBPF11Q86T75 865 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 SRBD1Q8N5C6 995 aaKnown RBP11.17□□□□□ -0.62
CUX1-216ENST00000558469 CHURC1Q8WUH1 139 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 LZTS2Q9BRK4 669 aa11.17□□□□□ -0.62
CUX1-216ENST00000558469 USP17L15C9J2P7 530 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 USP17L13C9JLJ4 530 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 USP17L11C9JVI0 530 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 USP17L18D6R9N7 530 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 USP17L22D6RA61 530 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 USP17L17D6RBQ6 530 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 USP17L19D6RCP7 530 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 USP17L20D6RJB6 530 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 FLOT1O75955 427 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 CTDNEP1O95476 244 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 HSP90AA1P07900 732 aaKnown RBP11.16□□□□□ -0.62
CUX1-216ENST00000558469 HTRA3P83110 453 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 USP17L24Q0WX57 530 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 NTRK3Q16288 839 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 GPAT2Q6NUI2 795 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 CPLX2Q6PUV4 134 aaKnown RBP11.16□□□□□ -0.62
CUX1-216ENST00000558469 CATSPERGQ6ZRH7 1159 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 ADGRF4Q8IZF3 695 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 SPRYD3Q8NCJ5 442 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 PIBF1Q8WXW3 757 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 BRI3BPQ8WY22 251 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 PHKBQ93100 1093 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 CAPNS2Q96L46 248 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 VAT1LQ9HCJ6 419 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 FBXO28Q9NVF7 368 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 FEM1BQ9UK73 627 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 AGTPBP1Q9UPW5 1226 aa11.16□□□□□ -0.62
CUX1-216ENST00000558469 hCG_1642624A0A1W2PR95 340 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 MANSC4A6NHS7 340 aaPredicted RBP11.15□□□□□ -0.62
CUX1-216ENST00000558469 CYTH3O43739 400 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 PLA2G6O60733 806 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 CDKL5O76039 1030 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 IFNAR1P17181 557 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 SMARCA1P28370 1054 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 HOXA7P31268 230 aaPredicted RBP11.15□□□□□ -0.62
CUX1-216ENST00000558469 SLC4A3P48751 1232 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 C1QTNF8P60827 252 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 SSRP1Q08945 709 aaKnown RBP11.15□□□□□ -0.62
CUX1-216ENST00000558469 PABPC4Q13310 644 aaKnown RBP eCLIP11.15□□□□□ -0.62
CUX1-216ENST00000558469 CUL4AQ13619 759 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 SYDE2Q5VT97 1194 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 BTNL9Q6UXG8 535 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 FAM160B2Q86V87 743 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 PRPF38AQ8NAV1 312 aaKnown RBP11.15□□□□□ -0.62
CUX1-216ENST00000558469 NSUN7Q8NE18 718 aaKnown RBP11.15□□□□□ -0.62
CUX1-216ENST00000558469 KIFC2Q96AC6 838 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 SLF1Q9BQI6 1058 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 LLPHQ9BRT6 129 aaKnown RBP11.15□□□□□ -0.62
CUX1-216ENST00000558469 SPZ1Q9BXG8 430 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 SLC26A6Q9BXS9 759 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 RIOX1Q9H6W3 641 aa11.15□□□□□ -0.62
CUX1-216ENST00000558469 DAXXQ9UER7 740 aaPredicted RBP11.15□□□□□ -0.62
CUX1-216ENST00000558469 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.15□□□□□ -0.62
CUX1-216ENST00000558469 A0A0G2JMZ2 1700 aa11.15□□□□□ -0.63
CUX1-216ENST00000558469 CNTNAP5Q8WYK1 1306 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 PTPDC1A2A3K4 754 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 TESPA1A2RU30 521 aaPredicted RBP11.14□□□□□ -0.63
CUX1-216ENST00000558469 BTBD19C9JJ37 291 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 PDHXO00330 501 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 JAK2O60674 1132 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 AOC2O75106 756 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 GABBR2O75899 941 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 OSBPP22059 807 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 INHBEP58166 350 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 SNAP25P60880 206 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 IRX3P78415 501 aaPredicted RBP11.14□□□□□ -0.63
CUX1-216ENST00000558469 AKAP17AQ02040 695 aaKnown RBP11.14□□□□□ -0.63
CUX1-216ENST00000558469 KIF23Q02241 960 aaPredicted RBP11.14□□□□□ -0.63
CUX1-216ENST00000558469 FUT2Q10981 343 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 COG2Q14746 738 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 SLC35G1Q2M3R5 365 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 ANKRD23Q86SG2 305 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 TRIM22Q8IYM9 498 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 RRP36Q96EU6 259 aaKnown RBP11.14□□□□□ -0.63
CUX1-216ENST00000558469 DDX11Q96FC9 970 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 PIGSQ96S52 555 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 ZIC5Q96T25 663 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 PTPN18Q99952 460 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 JMJD4Q9H9V9 463 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 PPP1R9AQ9ULJ8 1098 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 PRR12Q9ULL5 1215 aa11.14□□□□□ -0.63
CUX1-216ENST00000558469 V9GY48 417 aaPredicted RBP11.14□□□□□ -0.63
CUX1-216ENST00000558469 WDR33Q9C0J8 1336 aaKnown RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms