RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 ZNF214Q9UL59 606 aaPredicted RBP12.55□□□□□ -0.4
LINC00239-201ENST00000556973 ISY1Q9ULR0 285 aaKnown RBP12.55□□□□□ -0.4
LINC00239-201ENST00000556973 MTMR7Q9Y216 660 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 IVNS1ABPQ9Y6Y0 642 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 TNKSO95271 1327 aa12.55□□□□□ -0.4
LINC00239-201ENST00000556973 ZNFX1Q9P2E3 1918 aaKnown RBP12.54□□□□□ -0.4
LINC00239-201ENST00000556973 ERICH2A1L162 156 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 SLC27A2O14975 620 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 PDHBP11177 359 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 CYP2B6P20813 491 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 RGS2P41220 211 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 OAZ1P54368 228 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 UBXN2AP68543 259 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 MAP2K5Q13163 448 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 MORN1Q5T089 497 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 IFIT1BQ5T764 474 aaKnown RBP12.54□□□□□ -0.4
LINC00239-201ENST00000556973 CREB3L3Q68CJ9 461 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 NCAPG2Q86XI2 1143 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 TRMT44Q8IYL2 757 aaKnown RBP12.54□□□□□ -0.4
LINC00239-201ENST00000556973 PNMA1Q8ND90 353 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 USP6NLQ92738 828 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 ZNF333Q96JL9 665 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 TAF6LQ9Y6J9 622 aa12.54□□□□□ -0.4
LINC00239-201ENST00000556973 SNHG28P0DPA3 235 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 ELNP15502 786 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 GRB14Q14449 540 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 SART3Q15020 963 aaKnown RBP12.53□□□□□ -0.4
LINC00239-201ENST00000556973 SEC23AQ15436 765 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 CCDC96Q2M329 555 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 BTNL9Q6UXG8 535 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 STOX1Q6ZVD7 989 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 ABRAQ8N0Z2 381 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 CPXCR1Q8N123 301 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 MTA3Q9BTC8 594 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 TMEM106CQ9BVX2 250 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 TEX13BQ9BXU2 312 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 BIN2Q9UBW5 565 aaPredicted RBP12.53□□□□□ -0.4
LINC00239-201ENST00000556973 PRR12Q9ULL5 1215 aa12.53□□□□□ -0.4
LINC00239-201ENST00000556973 IFIT3O14879 490 aaKnown RBP12.52□□□□□ -0.41
LINC00239-201ENST00000556973 REC8O95072 547 aa12.52□□□□□ -0.41
LINC00239-201ENST00000556973 FCER1AP12319 257 aa12.52□□□□□ -0.41
LINC00239-201ENST00000556973 MCM5P33992 734 aa12.52□□□□□ -0.41
LINC00239-201ENST00000556973 ZNF543Q08ER8 600 aa12.52□□□□□ -0.41
LINC00239-201ENST00000556973 TSGA10IPQ3SY00 556 aa12.52□□□□□ -0.41
LINC00239-201ENST00000556973 GPATCH4Q5T3I0 446 aaKnown RBP12.52□□□□□ -0.41
LINC00239-201ENST00000556973 SNRNP48Q6IEG0 339 aaKnown RBP12.52□□□□□ -0.41
LINC00239-201ENST00000556973 TTBK2Q6IQ55 1244 aa12.52□□□□□ -0.41
LINC00239-201ENST00000556973 DPP9Q86TI2 863 aa12.52□□□□□ -0.41
LINC00239-201ENST00000556973 MB21D2Q8IYB1 491 aaPredicted RBP12.52□□□□□ -0.41
LINC00239-201ENST00000556973 RAVER2Q9HCJ3 691 aaKnown RBP12.52□□□□□ -0.41
LINC00239-201ENST00000556973 GPCPD1Q9NPB8 672 aa12.52□□□□□ -0.41
LINC00239-201ENST00000556973 FRMPD2Q68DX3 1309 aaPredicted RBP12.52□□□□□ -0.41
LINC00239-201ENST00000556973 RBBP6Q7Z6E9 1792 aaKnown RBP12.51□□□□□ -0.41
LINC00239-201ENST00000556973 ZNF236Q9UL36 1845 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 EPB41L2O43491 1005 aaKnown RBP12.51□□□□□ -0.41
LINC00239-201ENST00000556973 HOXC6P09630 235 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 ZKSCAN1P17029 563 aaPredicted RBP12.51□□□□□ -0.41
LINC00239-201ENST00000556973 RGS19P49795 217 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 WTAPQ15007 396 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 SYDE2Q5VT97 1194 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 RASGRP2Q7LDG7 609 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 CHST3Q7LGC8 479 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 TMTC2Q8N394 836 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 IGDCC4Q8TDY8 1250 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 MMP19Q99542 508 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 APBA2Q99767 749 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 SLC5A4Q9NY91 659 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 RIPK3Q9Y572 518 aa12.51□□□□□ -0.41
LINC00239-201ENST00000556973 HMGCRP04035 888 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 INHAP05111 366 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 PARP1P09874 1014 aaKnown RBP12.5□□□□□ -0.41
LINC00239-201ENST00000556973 ADORA2AP29274 412 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 SLC16A2P36021 539 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 SLC4A3P48751 1232 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 SOX10P56693 466 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 ANTXR2P58335 489 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 KRT32Q14532 448 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 KCTD2Q14681 263 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 TKFCQ3LXA3 575 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 ASPRV1Q53RT3 343 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 TMEM67Q5HYA8 995 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 CHST13Q8NET6 341 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 TRIB2Q92519 343 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 TMEM87BQ96K49 555 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 NEK1Q96PY6 1258 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 RANBP17Q9H2T7 1088 aaKnown RBP12.5□□□□□ -0.41
LINC00239-201ENST00000556973 FBXO40Q9UH90 709 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 PNMA2Q9UL42 364 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 ZNF536O15090 1300 aa12.5□□□□□ -0.41
LINC00239-201ENST00000556973 PLXNA1Q9UIW2 1896 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 PRC1O43663 620 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 MYCP01106 439 aaPredicted RBP12.49□□□□□ -0.41
LINC00239-201ENST00000556973 GOLGA8HP0CJ92 632 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 CCL5P13501 91 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 CAPN2P17655 700 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 HSPA4P34932 840 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 MTFR1Q15390 333 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 CCDC174Q6PII3 467 aa12.49□□□□□ -0.41
LINC00239-201ENST00000556973 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.49□□□□□ -0.41
LINC00239-201ENST00000556973 NPLOC4Q8TAT6 608 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms