RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 LRFN4Q6PJG9 635 aa5.63□□□□□ -1.51
ATXN3-240ENST00000556339 MFSD2AQ8NA29 543 aa5.63□□□□□ -1.51
ATXN3-240ENST00000556339 OSBPL7Q9BZF2 842 aa5.63□□□□□ -1.51
ATXN3-240ENST00000556339 NSUN3Q9H649 340 aaKnown RBP5.63□□□□□ -1.51
ATXN3-240ENST00000556339 FBRSQ9HAH7 460 aa5.63□□□□□ -1.51
ATXN3-240ENST00000556339 POGKQ9P215 609 aa5.63□□□□□ -1.51
ATXN3-240ENST00000556339 ADGRF5Q8IZF2 1346 aa5.63□□□□□ -1.51
ATXN3-240ENST00000556339 RRBP1Q9P2E9 1410 aaKnown RBP5.63□□□□□ -1.51
ATXN3-240ENST00000556339 USP17L7P0C7H9 530 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 GDNFP39905 211 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 RASIP1Q5U651 963 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 LETMD1Q6P1Q0 360 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 KRT28Q7Z3Y7 464 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 HID1Q8IV36 788 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 LRRC56Q8IYG6 542 aaPredicted RBP5.62□□□□□ -1.51
ATXN3-240ENST00000556339 FBXO15Q8NCQ5 510 aaPredicted RBP5.62□□□□□ -1.51
ATXN3-240ENST00000556339 ALPK1Q96QP1 1244 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 WNT10AQ9GZT5 417 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 SLAMF8Q9P0V8 285 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 ZSWIM5Q9P217 1185 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 FAM8A1Q9UBU6 413 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 TRPC5Q9UL62 973 aaPredicted RBP5.62□□□□□ -1.51
ATXN3-240ENST00000556339 GNEQ9Y223 722 aaKnown RBP5.62□□□□□ -1.51
ATXN3-240ENST00000556339 CCDC9Q9Y3X0 531 aaKnown RBP5.62□□□□□ -1.51
ATXN3-240ENST00000556339 NPHP3Q7Z494 1330 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 CCDC144AA2RUR9 1427 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 DCCP43146 1447 aa5.62□□□□□ -1.51
ATXN3-240ENST00000556339 ZNF865P0CJ78 1059 aaPredicted RBP5.61□□□□□ -1.51
ATXN3-240ENST00000556339 LRPPRCP42704 1394 aaKnown RBP5.61□□□□□ -1.51
ATXN3-240ENST00000556339 CLTCL1P53675 1640 aa5.61□□□□□ -1.51
ATXN3-240ENST00000556339 MST1RQ04912 1400 aa5.61□□□□□ -1.51
ATXN3-240ENST00000556339 COL16A1Q07092 1604 aaPredicted RBP5.61□□□□□ -1.51
ATXN3-240ENST00000556339 C1orf167Q5SNV9 1468 aa5.61□□□□□ -1.51
ATXN3-240ENST00000556339 UBE2FQ969M7 185 aa5.61□□□□□ -1.51
ATXN3-240ENST00000556339 SETDB2Q96T68 719 aa5.61□□□□□ -1.51
ATXN3-240ENST00000556339 C12orf49Q9H741 205 aa5.61□□□□□ -1.51
ATXN3-240ENST00000556339 ADGRL3Q9HAR2 1447 aa5.61□□□□□ -1.51
ATXN3-240ENST00000556339 ROBO2Q9HCK4 1378 aa5.61□□□□□ -1.51
ATXN3-240ENST00000556339 SEMA3GQ9NS98 782 aa5.61□□□□□ -1.51
ATXN3-240ENST00000556339 AHDC1Q5TGY3 1603 aaPredicted RBP5.6□□□□□ -1.51
ATXN3-240ENST00000556339 SETBP1Q9Y6X0 1596 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 ASXL1Q8IXJ9 1541 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 HFM1A2PYH4 1435 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 SETD5Q9C0A6 1442 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 DHX57Q6P158 1386 aaKnown RBP5.6□□□□□ -1.51
ATXN3-240ENST00000556339 PNPLA6Q8IY17 1366 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 ANKRD30BQ9BXX2 1392 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.6□□□□□ -1.51
ATXN3-240ENST00000556339 BRD1O95696 1058 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 TMEM253P0C7T8 217 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 CFPP27918 469 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 SLBPQ14493 270 aaKnown RBP eCLIP5.6□□□□□ -1.51
ATXN3-240ENST00000556339 NKG7Q16617 165 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 PRAMEF13Q5VWM6 474 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 TTBK2Q6IQ55 1244 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.6□□□□□ -1.51
ATXN3-240ENST00000556339 C22orf34Q6ZV56 151 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 THAP5Q7Z6K1 395 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 TTC6Q86TZ1 520 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 ABHD4Q8TB40 342 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 DCP1AQ9NPI6 582 aaPredicted RBP5.6□□□□□ -1.51
ATXN3-240ENST00000556339 WWC3Q9ULE0 1092 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 SNCAIPQ9Y6H5 919 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 CAPN6Q9Y6Q1 641 aa5.6□□□□□ -1.51
ATXN3-240ENST00000556339 LRP6O75581 1613 aa5.59□□□□□ -1.51
ATXN3-240ENST00000556339 NEXMIFQ5QGS0 1516 aa5.59□□□□□ -1.51
ATXN3-240ENST00000556339 ZSCAN22P10073 491 aaPredicted RBP5.59□□□□□ -1.51
ATXN3-240ENST00000556339 GRK4P32298 578 aa5.59□□□□□ -1.51
ATXN3-240ENST00000556339 PTPN11Q06124 597 aaPredicted RBP5.59□□□□□ -1.51
ATXN3-240ENST00000556339 FMR1Q06787 632 aaKnown RBP eCLIP5.59□□□□□ -1.51
ATXN3-240ENST00000556339 SV2BQ7L1I2 683 aa5.59□□□□□ -1.51
ATXN3-240ENST00000556339 COX4I2Q96KJ9 171 aa5.59□□□□□ -1.51
ATXN3-240ENST00000556339 PRAM1Q96QH2 718 aa5.59□□□□□ -1.51
ATXN3-240ENST00000556339 EPB41L4BQ9H329 900 aa5.59□□□□□ -1.51
ATXN3-240ENST00000556339 C14orf93Q9H972 538 aaKnown RBP5.59□□□□□ -1.51
ATXN3-240ENST00000556339 ST14Q9Y5Y6 855 aa5.59□□□□□ -1.51
ATXN3-240ENST00000556339 SHPRHQ149N8 1683 aa5.59□□□□□ -1.52
ATXN3-240ENST00000556339 SETD1AO15047 1707 aaKnown RBP5.58□□□□□ -1.52
ATXN3-240ENST00000556339 C1QTNF9P0C862 333 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 KIR3DL1P43629 444 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 HK2P52789 917 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 CCDC85BQ15834 202 aaPredicted RBP5.58□□□□□ -1.52
ATXN3-240ENST00000556339 LCE4AQ5TA78 99 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 DIEXFQ68CQ4 756 aaKnown RBP5.58□□□□□ -1.52
ATXN3-240ENST00000556339 CDH24Q86UP0 819 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 RIN3Q8TB24 985 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 PMFBP1Q8TBY8 1022 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 ANKRD24Q8TF21 1146 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 ASB16Q96NS5 453 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 C19orf73Q9NVV2 129 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 NRXN3Q9Y4C0 1643 aa5.58□□□□□ -1.52
ATXN3-240ENST00000556339 XRN1Q8IZH2 1706 aaKnown RBP5.57□□□□□ -1.52
ATXN3-240ENST00000556339 ABCC11Q96J66 1382 aa5.57□□□□□ -1.52
ATXN3-240ENST00000556339 CNTNAP4Q9C0A0 1308 aa5.57□□□□□ -1.52
ATXN3-240ENST00000556339 TCAF2A6NFQ2 919 aa5.57□□□□□ -1.52
ATXN3-240ENST00000556339 NPIPB6E9PJ23 425 aa5.57□□□□□ -1.52
ATXN3-240ENST00000556339 CST3P01034 146 aaPredicted RBP5.57□□□□□ -1.52
ATXN3-240ENST00000556339 PGRP06401 933 aa5.57□□□□□ -1.52
ATXN3-240ENST00000556339 EIF4BP23588 611 aaKnown RBP5.57□□□□□ -1.52
ATXN3-240ENST00000556339 CAP2P40123 477 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms