RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 CHST7Q9NS84 486 aa7.28□□□□□ -1.24
SCFD1-217ENST00000555953 RAPGEFL1Q9UHV5 662 aa7.28□□□□□ -1.24
SCFD1-217ENST00000555953 CNOT6Q9ULM6 557 aaKnown RBP7.28□□□□□ -1.24
SCFD1-217ENST00000555953 MEIS1O00470 390 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 SDHBP21912 280 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 SSPNQ14714 243 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 LDLRAD1Q5T700 205 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 SLITRK4Q8IW52 837 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 NKD1Q969G9 470 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 EAF1Q96JC9 268 aaPredicted RBP7.27□□□□□ -1.25
SCFD1-217ENST00000555953 FCRL2Q96LA5 508 aaPredicted RBP7.27□□□□□ -1.25
SCFD1-217ENST00000555953 SLC9A7Q96T83 725 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 NT5C1AQ9BXI3 368 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 MKRN2Q9H000 416 aaKnown RBP7.27□□□□□ -1.25
SCFD1-217ENST00000555953 GFOD1Q9NXC2 390 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 MBD1Q9UIS9 605 aaPredicted RBP7.27□□□□□ -1.25
SCFD1-217ENST00000555953 KCTD3Q9Y597 815 aa7.27□□□□□ -1.25
SCFD1-217ENST00000555953 FADS2P1A8MWK0 482 aa7.26□□□□□ -1.25
SCFD1-217ENST00000555953 CTSKP43235 329 aa7.26□□□□□ -1.25
SCFD1-217ENST00000555953 RTP1P59025 263 aa7.26□□□□□ -1.25
SCFD1-217ENST00000555953 SRSF3P84103 164 aaKnown RBP7.26□□□□□ -1.25
SCFD1-217ENST00000555953 KIR3DS1Q14943 382 aa7.26□□□□□ -1.25
SCFD1-217ENST00000555953 LRRFIP1Q32MZ4 808 aaKnown RBP7.26□□□□□ -1.25
SCFD1-217ENST00000555953 GPR55Q9Y2T6 319 aaPredicted RBP7.26□□□□□ -1.25
SCFD1-217ENST00000555953 HRKO00198 91 aa7.25□□□□□ -1.25
SCFD1-217ENST00000555953 PNLIPP16233 465 aa7.25□□□□□ -1.25
SCFD1-217ENST00000555953 VIPR1P32241 457 aa7.25□□□□□ -1.25
SCFD1-217ENST00000555953 CEBPAP49715 358 aaPredicted RBP7.25□□□□□ -1.25
SCFD1-217ENST00000555953 ERVK13-1Q9NX77 482 aa7.25□□□□□ -1.25
SCFD1-217ENST00000555953 TNFRSF10DQ9UBN6 386 aa7.25□□□□□ -1.25
SCFD1-217ENST00000555953 FBXL21Q9UKT6 434 aa7.25□□□□□ -1.25
SCFD1-217ENST00000555953 PCDHB12Q9Y5F1 795 aa7.25□□□□□ -1.25
SCFD1-217ENST00000555953 ZNF205O95201 554 aa7.24□□□□□ -1.25
SCFD1-217ENST00000555953 HOXA5P20719 270 aa7.24□□□□□ -1.25
SCFD1-217ENST00000555953 BMP8BP34820 402 aa7.24□□□□□ -1.25
SCFD1-217ENST00000555953 EPHB3P54753 998 aa7.24□□□□□ -1.25
SCFD1-217ENST00000555953 YBX1P67809 324 aaKnown RBP7.24□□□□□ -1.25
SCFD1-217ENST00000555953 AUHQ13825 339 aaKnown RBP7.24□□□□□ -1.25
SCFD1-217ENST00000555953 HSF5Q4G112 596 aaPredicted RBP7.24□□□□□ -1.25
SCFD1-217ENST00000555953 CRTC3Q6UUV7 619 aa7.24□□□□□ -1.25
SCFD1-217ENST00000555953 KIAA0825Q8IV33 1275 aa7.24□□□□□ -1.25
SCFD1-217ENST00000555953 SPON2Q9BUD6 331 aa7.24□□□□□ -1.25
SCFD1-217ENST00000555953 KRTAP4-2Q9BYR5 136 aa7.24□□□□□ -1.25
SCFD1-217ENST00000555953 CNTD2Q9H8S5 307 aa7.24□□□□□ -1.25
SCFD1-217ENST00000555953 FAM86C2PA6NEL3 165 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 ACRP10323 421 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 PI3P19957 117 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 ERVFRD-1P60508 538 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 ZNF385BQ569K4 471 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 GALNT18Q6P9A2 607 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 PANK1Q8TE04 598 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 CDADC1Q9BWV3 514 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 SIRT5Q9NXA8 310 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 TAF6LQ9Y6J9 622 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 NCANO14594 1321 aa7.23□□□□□ -1.25
SCFD1-217ENST00000555953 C9IYK1 514 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 RFXAPO00287 272 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 SHOXO15266 292 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 VAV1P15498 845 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 BMP7P18075 431 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 TCERG1LQ5VWI1 586 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 SLCO6A1Q86UG4 719 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 TMEM87AQ8NBN3 555 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 SIGLEC10Q96LC7 697 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 C20orf173Q96LM9 149 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 PARD6AQ9NPB6 346 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 SUCOQ9UBS9 1254 aaKnown RBP7.22□□□□□ -1.25
SCFD1-217ENST00000555953 ZNRF3Q9ULT6 936 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 IRAK3Q9Y616 596 aa7.22□□□□□ -1.25
SCFD1-217ENST00000555953 WTIPA6NIX2 430 aaPredicted RBP7.21□□□□□ -1.26
SCFD1-217ENST00000555953 B8ZZF3 427 aa7.21□□□□□ -1.26
SCFD1-217ENST00000555953 PRRG2O14669 202 aa7.21□□□□□ -1.26
SCFD1-217ENST00000555953 ENDOUP21128 410 aaKnown RBP7.21□□□□□ -1.26
SCFD1-217ENST00000555953 CTSWP56202 376 aa7.21□□□□□ -1.26
SCFD1-217ENST00000555953 AP5S1Q9NUS5 200 aa7.21□□□□□ -1.26
SCFD1-217ENST00000555953 PRR13Q9NZ81 148 aa7.21□□□□□ -1.26
SCFD1-217ENST00000555953 N4BP3O15049 544 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 TRIM13O60858 407 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 ZNF16P17020 682 aaPredicted RBP7.2□□□□□ -1.26
SCFD1-217ENST00000555953 PRKCAP17252 672 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 CDR1P51861 262 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 RTP2Q5QGT7 225 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 TDRD10Q5VZ19 366 aaKnown RBP7.2□□□□□ -1.26
SCFD1-217ENST00000555953 INTS3Q68E01 1043 aaKnown RBP7.2□□□□□ -1.26
SCFD1-217ENST00000555953 C7orf61Q8IZ16 206 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 TMEM52Q8NDY8 209 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 KCNC2Q96PR1 638 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 BCL11AQ9H165 835 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 ZCCHC4Q9H5U6 513 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 EPB41L4AQ9HCS5 686 aaPredicted RBP7.2□□□□□ -1.26
SCFD1-217ENST00000555953 KLHL14Q9P2G3 628 aa7.2□□□□□ -1.26
SCFD1-217ENST00000555953 A0A1W2PQ45 241 aaPredicted RBP7.19□□□□□ -1.26
SCFD1-217ENST00000555953 A0A1W2PQY0 241 aa7.19□□□□□ -1.26
SCFD1-217ENST00000555953 MPOP05164 745 aa7.19□□□□□ -1.26
SCFD1-217ENST00000555953 ZNF76P36508 570 aa7.19□□□□□ -1.26
SCFD1-217ENST00000555953 PPFIBP1Q86W92 1011 aa7.19□□□□□ -1.26
SCFD1-217ENST00000555953 CCDC144CPQ8IYA2 1237 aa7.19□□□□□ -1.26
SCFD1-217ENST00000555953 NUP43Q8NFH3 380 aa7.19□□□□□ -1.26
SCFD1-217ENST00000555953 DACT3Q96B18 629 aaPredicted RBP7.19□□□□□ -1.26
SCFD1-217ENST00000555953 DHRS1Q96LJ7 313 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms