RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 ANKARQ7Z5J8 1434 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 DDAH1O94760 285 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 ADD1P35611 737 aaKnown RBP9.09□□□□□ -0.95
SYNE2-220ENST00000555612 SLC9C1Q4G0N8 1177 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 SCYL2Q6P3W7 929 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 ATRIPQ8WXE1 791 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 SERTAD1Q9UHV2 236 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 OR52Z1P0C646 297 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 GTF2F1P35269 517 aaKnown RBP eCLIP9.09□□□□□ -0.95
SYNE2-220ENST00000555612 PTH1RQ03431 593 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 KLHL30Q0D2K2 578 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 LONRF3Q496Y0 759 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 BSPRYQ5W0U4 402 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 GPR161Q8N6U8 529 aaKnown RBP9.09□□□□□ -0.95
SYNE2-220ENST00000555612 TBC1D31Q96DN5 1066 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 SERPINB13Q9UIV8 391 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 USP6P35125 1406 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 UBE3CQ15386 1083 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 SUSD4Q5VX71 490 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 FAM178BQ8IXR5 827 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 UBLCP1Q8WVY7 318 aaPredicted RBP9.09□□□□□ -0.95
SYNE2-220ENST00000555612 SMC6Q96SB8 1091 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 PPP1R16BQ96T49 567 aa9.09□□□□□ -0.95
SYNE2-220ENST00000555612 ATP10DQ9P241 1426 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 SPDYE16A6NNV3 312 aaPredicted RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 TRIM14Q14142 442 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 CCDC6Q16204 474 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 SPDYE2Q495Y8 402 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 CASC4Q6P4E1 433 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 TRMT44Q8IYL2 757 aaKnown RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 CCDC127Q96BQ5 260 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 TTC14Q96N46 770 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 KANSL2Q9H9L4 492 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 IGSF1Q8N6C5 1336 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 SYNJ2BP-COX16A0A087WUM0 186 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 RPS6KA4O75676 772 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 USP17L8P0C7I0 530 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 ARPP19P56211 112 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 SYT10Q6XYQ8 523 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 MLKLQ8NB16 471 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 NAP1L3Q99457 506 aaPredicted RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 NLRC4Q9NPP4 1024 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 COX16Q9P0S2 106 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 H0YCG3 227 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 OPA1O60313 960 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 CIAO1O76071 339 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 NOLC1Q14978 699 aaKnown RBP eCLIP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 CCDC26Q8TAB7 109 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 GABPB2Q8TAK5 448 aaPredicted RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 ARFGAP3Q9NP61 516 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 FAM207AQ9NSI2 230 aaPredicted RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 HESX1Q9UBX0 185 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 SPATA31A3Q5VYP0 1347 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 BMP3P12645 472 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 HSPA4P34932 840 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 VAV2P52735 878 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 LRCH2Q5VUJ6 765 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 KIAA1841Q6NSI8 718 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 ZNF577Q9BSK1 485 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 SRRTQ9BXP5 876 aaKnown RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 TLR7Q9NYK1 1049 aaKnown RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 HEG1Q9ULI3 1381 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 ERVV-1B6SEH8 477 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 INO80B-WBP1J3KQ70 363 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 FOSP01100 380 aaPredicted RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 GPATCH4Q5T3I0 446 aaKnown RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 ARMCX5Q6P1M9 558 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 MYOCDQ8IZQ8 938 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 PGBD1Q96JS3 809 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 TRIM31Q9BZY9 425 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 TRIM7Q9C029 511 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 INO80BQ9C086 356 aaPredicted RBP9.08□□□□□ -0.96
SYNE2-220ENST00000555612 MED23Q9ULK4 1368 aa9.08□□□□□ -0.96
SYNE2-220ENST00000555612 TLR3O15455 904 aaKnown RBP9.07□□□□□ -0.96
SYNE2-220ENST00000555612 ZSCAN20P17040 1043 aaPredicted RBP9.07□□□□□ -0.96
SYNE2-220ENST00000555612 CACNB3P54284 484 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 CYP26C1Q6V0L0 522 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 NOSTRINQ8IVI9 506 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 COPRSQ9NQ92 184 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 PANK4Q9NVE7 773 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 ZMYM6O95789 1325 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 PRR36Q9H6K5 1346 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 ADGBQ8N7X0 1667 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 SASH1O94885 1247 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 XRCC5P13010 732 aaKnown RBP9.07□□□□□ -0.96
SYNE2-220ENST00000555612 ITKQ08881 620 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 PI16Q6UXB8 463 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 SND1Q7KZF4 910 aaKnown RBP eCLIP9.07□□□□□ -0.96
SYNE2-220ENST00000555612 RETREG2Q8NC44 543 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 DHX36Q9H2U1 1008 aaKnown RBP9.07□□□□□ -0.96
SYNE2-220ENST00000555612 C1orf112Q9NSG2 853 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 NFE2L3Q9Y4A8 694 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 PNOCQ13519 176 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 CLUL1Q15846 466 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 ASPRV1Q53RT3 343 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 SFMBT2Q5VUG0 894 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 ATP6V0A1Q93050 837 aa9.07□□□□□ -0.96
SYNE2-220ENST00000555612 ZFP91Q96JP5 570 aaPredicted RBP9.07□□□□□ -0.96
SYNE2-220ENST00000555612 LSM14BQ9BX40 385 aaKnown RBP9.07□□□□□ -0.96
SYNE2-220ENST00000555612 LARSQ9P2J5 1176 aaKnown RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms