RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 KIF28PB7ZC32 967 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 PDIA4P13667 645 aaKnown RBP11.78□□□□□ -0.52
SRP54-208ENST00000555557 HMGCS2P54868 508 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 MAP3K11Q16584 847 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 WWC2Q6AWC2 1192 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 FBXO28Q9NVF7 368 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 ADAMTS3O15072 1205 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 CELF2O95319 508 aaKnown RBP11.78□□□□□ -0.52
SRP54-208ENST00000555557 BAG4O95429 457 aaKnown RBP11.78□□□□□ -0.52
SRP54-208ENST00000555557 RESTQ13127 1097 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 KIFC2Q96AC6 838 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 COA7Q96BR5 231 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 OTUD5Q96G74 571 aa11.78□□□□□ -0.52
SRP54-208ENST00000555557 RBM27Q9P2N5 1060 aaKnown RBP11.78□□□□□ -0.52
SRP54-208ENST00000555557 SEC63Q9UGP8 760 aaKnown RBP11.78□□□□□ -0.52
SRP54-208ENST00000555557 BTBD18B2RXH4 712 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 IRF6O14896 467 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 PPP1R11O60927 126 aaPredicted RBP11.77□□□□□ -0.53
SRP54-208ENST00000555557 ITGBL1O95965 494 aaPredicted RBP11.77□□□□□ -0.53
SRP54-208ENST00000555557 MMP1P03956 469 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 XBP1P17861 261 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 VCAM1P19320 739 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 STAT2P52630 851 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 KIF23Q02241 960 aaPredicted RBP11.77□□□□□ -0.53
SRP54-208ENST00000555557 SYDE2Q5VT97 1194 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 CHADLQ6NUI6 762 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 OXER1Q8TDS5 423 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 PHF20Q9BVI0 1012 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 PRR12Q9ULL5 1215 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 DOCK1Q14185 1865 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 CEP350Q5VT06 3117 aa11.77□□□□□ -0.53
SRP54-208ENST00000555557 PNMA6FA0A0J9YX94 578 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 STXBP3O00186 592 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 ZBTB5O15062 677 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 TAL1P17542 331 aaPredicted RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 USP14P54578 494 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 NLRP5P59047 1200 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 DNM1Q05193 864 aaKnown RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 NR5A1Q13285 461 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 NFKBIBQ15653 356 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 CDC37Q16543 378 aaPredicted RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 QRICH1Q2TAL8 776 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 LDLRAD1Q5T700 205 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 CST9Q5W186 159 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 BTNL9Q6UXG8 535 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 DIS3L2Q8IYB7 885 aaKnown RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 LPAR1Q92633 364 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 MTMR8Q96EF0 704 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 RPAP3Q9H6T3 665 aaPredicted RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 GDPD2Q9HCC8 539 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 BARHL2Q9NY43 387 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 C19orf81C9J6K1 198 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 KIF3CO14782 793 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 WDR46O15213 610 aaKnown RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 GNL2Q13823 731 aaKnown RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 NPY5RQ15761 445 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 ERO1BQ86YB8 467 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 OPTNQ96CV9 577 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 TANGO6Q9C0B7 1094 aa11.76□□□□□ -0.53
SRP54-208ENST00000555557 ZSCAN16Q9H4T2 348 aaPredicted RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 GBA2Q9HCG7 927 aaPredicted RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 TFIP11Q9UBB9 837 aaKnown RBP11.76□□□□□ -0.53
SRP54-208ENST00000555557 NCLP19338 710 aaKnown RBP11.75□□□□□ -0.53
SRP54-208ENST00000555557 NAPAP54920 295 aa11.75□□□□□ -0.53
SRP54-208ENST00000555557 PPATQ06203 517 aa11.75□□□□□ -0.53
SRP54-208ENST00000555557 SAFBQ15424 915 aaKnown RBP eCLIP11.75□□□□□ -0.53
SRP54-208ENST00000555557 CLEC17AQ6ZS10 378 aa11.75□□□□□ -0.53
SRP54-208ENST00000555557 CHURC1Q8WUH1 139 aa11.75□□□□□ -0.53
SRP54-208ENST00000555557 SLC10A4Q96EP9 437 aa11.75□□□□□ -0.53
SRP54-208ENST00000555557 GBP4Q96PP9 640 aa11.75□□□□□ -0.53
SRP54-208ENST00000555557 FEM1BQ9UK73 627 aa11.75□□□□□ -0.53
SRP54-208ENST00000555557 CNPY2Q9Y2B0 182 aa11.75□□□□□ -0.53
SRP54-208ENST00000555557 SPDYE5A6NIY4 337 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 FLOT1O75955 427 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 MCM4P33991 863 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 GJA5P36382 358 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 NOM1Q5C9Z4 860 aaKnown RBP11.74□□□□□ -0.53
SRP54-208ENST00000555557 EARS2Q5JPH6 523 aaKnown RBP11.74□□□□□ -0.53
SRP54-208ENST00000555557 CCDC174Q6PII3 467 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 C2orf69Q8N8R5 385 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 FTOQ9C0B1 505 aaKnown RBP eCLIP11.74□□□□□ -0.53
SRP54-208ENST00000555557 TMOD4Q9NZQ9 345 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 ATP6V1DQ9Y5K8 247 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 OTOFQ9HC10 1997 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 SMCO2A6NFE2 343 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 U2AF2P26368 475 aaKnown RBP eCLIP11.74□□□□□ -0.531e-7■■■■■ 102.2
SRP54-208ENST00000555557 KRT2P35908 639 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 CEBPZQ03701 1054 aaKnown RBP11.74□□□□□ -0.53
SRP54-208ENST00000555557 MKRN3Q13064 507 aaKnown RBP11.74□□□□□ -0.53
SRP54-208ENST00000555557 USH1GQ495M9 461 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 TREML2Q5T2D2 321 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 FAM160B2Q86V87 743 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 RGS22Q8NE09 1264 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 RBM46Q8TBY0 533 aaKnown RBP11.74□□□□□ -0.53
SRP54-208ENST00000555557 RASGRP4Q8TDF6 673 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 C12orf42Q96LP6 360 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 SLF1Q9BQI6 1058 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 SH3GLB2Q9NR46 395 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 PCDHA1Q9Y5I3 950 aa11.74□□□□□ -0.53
SRP54-208ENST00000555557 MYH6P13533 1939 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms