RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 TMEM232C9JQI7 657 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 FKTNO75072 461 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 SNHG28P0DPA3 235 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 HSPA8P11142 646 aaKnown RBP12.71□□□□□ -0.37
SHMT2-218ENST00000555213 DSG3P32926 999 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 KIF5BP33176 963 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 EVCP57679 992 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 CCNA1P78396 465 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 ZNF543Q08ER8 600 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 ARHGEF6Q15052 776 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 ME3Q16798 604 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 LBX2Q6XYB7 198 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 KCTD1Q719H9 257 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 CCAR1Q8IX12 1150 aaKnown RBP12.71□□□□□ -0.37
SHMT2-218ENST00000555213 ANKRD13CQ8N6S4 541 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 PRPF38AQ8NAV1 312 aaKnown RBP12.71□□□□□ -0.37
SHMT2-218ENST00000555213 GPRC5AQ8NFJ5 357 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 CTCFLQ8NI51 663 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-218ENST00000555213 KIFC2Q96AC6 838 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 CHMP4CQ96CF2 233 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 ERO1AQ96HE7 468 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 PAGR1Q9BTK6 254 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 LRRC2Q9BYS8 371 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 RABGAP1Q9Y3P9 1069 aa12.71□□□□□ -0.37
SHMT2-218ENST00000555213 PLA2G6O60733 806 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 ZBED4O75132 1171 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 FDX1P10109 184 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 SP3Q02447 781 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 C17orf99Q6UX52 265 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 SGMS1Q86VZ5 419 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 ZNF654Q8IZM8 581 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 NUP133Q8WUM0 1156 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 ATG4CQ96DT6 458 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 CWC22Q9HCG8 908 aaKnown RBP12.7□□□□□ -0.38
SHMT2-218ENST00000555213 GPCPD1Q9NPB8 672 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 FBXO28Q9NVF7 368 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 MORF4L1Q9UBU8 362 aa12.7□□□□□ -0.38
SHMT2-218ENST00000555213 DHX16O60231 1041 aaKnown RBP12.69□□□□□ -0.38
SHMT2-218ENST00000555213 BCRP11274 1271 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 COPB2P35606 906 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 LBX1P52954 281 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 FCGRTP55899 365 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 GRM4Q14833 912 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 SYDE2Q5VT97 1194 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 NOL8Q76FK4 1167 aaKnown RBP12.69□□□□□ -0.38
SHMT2-218ENST00000555213 RASGRP2Q7LDG7 609 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 MICU3Q86XE3 530 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 ZNF296Q8WUU4 475 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-218ENST00000555213 MAP3K14Q99558 947 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 R3HDMLQ9H3Y0 253 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 SENP2Q9HC62 589 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 PNMA2Q9UL42 364 aa12.69□□□□□ -0.38
SHMT2-218ENST00000555213 NAP1L2Q9ULW6 460 aaPredicted RBP12.69□□□□□ -0.38
SHMT2-218ENST00000555213 KLF18A0A0U1RQI7 1052 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 GOLGA8BA8MQT2 603 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 VWA5AO00534 786 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 ZBTB43O43298 467 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 GOLGA8HP0CJ92 632 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 GNAQP50148 359 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 RCAN1P53805 252 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 OAZ1P54368 228 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 ERVK-9P63128 1117 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 ERVK-24P63145 666 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 LACTBP83111 547 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-218ENST00000555213 TROAPQ12815 778 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 PLS1Q14651 629 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 ANKRD1Q15327 319 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 APOA5Q6Q788 366 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 BRF1Q92994 677 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 ZSCAN31Q96LW9 406 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-218ENST00000555213 TEX13BQ9BXU2 312 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 FOXD4L1Q9NU39 408 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 DAXXQ9UER7 740 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-218ENST00000555213 BRPF3Q9ULD4 1205 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 A0A0G2JMZ2 1700 aa12.68□□□□□ -0.38
SHMT2-218ENST00000555213 GNRH1P01148 92 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 MAPK4P31152 587 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 SLC16A2P36021 539 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 BTNL9Q6UXG8 535 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 NECAB1Q8N987 351 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 INTS4Q96HW7 963 aaKnown RBP12.67□□□□□ -0.38
SHMT2-218ENST00000555213 LZTS2Q9BRK4 669 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 MYL10Q9BUA6 226 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 SPATC1LQ9H0A9 340 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 SLKQ9H2G2 1235 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-218ENST00000555213 SLC38A10Q9HBR0 1119 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 TXNRD2Q9NNW7 524 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 PRDM10Q9NQV6 1147 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 RBM28Q9NW13 759 aaKnown RBP12.67□□□□□ -0.38
SHMT2-218ENST00000555213 RBPJLQ9UBG7 517 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 PRR12Q9ULL5 1215 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 ADAMTS5Q9UNA0 930 aa12.67□□□□□ -0.38
SHMT2-218ENST00000555213 CCDC196A0A1B0GTZ2 297 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 GOLGA8AA7E2F4 631 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 KLRF2D3W0D1 207 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 TNPO2O14787 897 aaKnown RBP12.66□□□□□ -0.38
SHMT2-218ENST00000555213 DTNBO60941 627 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 FMNL1O95466 1100 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-218ENST00000555213 SLC25A27O95847 323 aa12.66□□□□□ -0.38
SHMT2-218ENST00000555213 PDIA3P30101 505 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms