RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, human

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS33B-204	ENST00000554660	GRIN2C	Q14957	1233 aa		13.61	□□□□□ -0.23
VPS33B-204	ENST00000554660	ERC1	Q8IUD2	1116 aa		13.61	□□□□□ -0.23
VPS33B-204	ENST00000554660	TINF2	Q9BSI4	451 aa		13.61	□□□□□ -0.23
VPS33B-204	ENST00000554660	SH2D4A	Q9H788	454 aa		13.61	□□□□□ -0.23
VPS33B-204	ENST00000554660	APBB1	O00213	710 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	RAD21	O60216	631 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	ADAMTS4	O75173	837 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	MBD4	O95243	580 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	ZNF865	P0CJ78	1059 aa	Predicted RBP	13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	AKR1A1	P14550	325 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	ZNF792	Q3KQV3	632 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	RIOX2	Q8IUF8	465 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	RHPN1	Q8TCX5	695 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	TMEM39A	Q9NV64	488 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	NRBP1	Q9UHY1	535 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	ZNF214	Q9UL59	606 aa	Predicted RBP	13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	SYNRG	Q9UMZ2	1314 aa		13.6	□□□□□ -0.23
VPS33B-204	ENST00000554660	DDX11L8	A8MPP1	907 aa		13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	VWA5A	O00534	786 aa		13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	CHGB	P05060	677 aa		13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	EEF2	P13639	858 aa	Known RBP	13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	FAAP100	Q0VG06	881 aa		13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	FAM83B	Q5T0W9	1011 aa		13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	STARD7	Q9NQZ5	370 aa		13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	PPP1R9A	Q9ULJ8	1098 aa		13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	ADAMTS5	Q9UNA0	930 aa		13.59	□□□□□ -0.23
VPS33B-204	ENST00000554660	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.58	□□□□□ -0.23
VPS33B-204	ENST00000554660	SMCHD1	A6NHR9	2005 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	MYADML2	A6NDP7	307 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	DDIT3	P35638	169 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	STAT3	P40763	770 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	CDK8	P49336	464 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	ACLY	P53396	1101 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	MFAP1	P55081	439 aa	Known RBP	13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	IRX5	P78411	483 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	ANKRD33	Q7Z3H0	272 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	IL27	Q8NEV9	243 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	REPS2	Q8NFH8	660 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	TIFA	Q96CG3	184 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	NUP88	Q99567	741 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	ZHX1	Q9UKY1	873 aa	Predicted RBP	13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	CNPY2	Q9Y2B0	182 aa		13.58	□□□□□ -0.24
VPS33B-204	ENST00000554660	ADD2	P35612	726 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	PBX2	P40425	430 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	TJAP1	Q5JTD0	557 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	C12orf60	Q5U649	245 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	C16orf86	Q6ZW13	317 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	SYMPK	Q92797	1274 aa	Known RBP	13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	CCDC17	Q96LX7	622 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	ZNF576	Q9H609	170 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	DCTPP1	Q9H773	170 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	ATP8A2	Q9NTI2	1148 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	TBX21	Q9UL17	535 aa		13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	DIS3	Q9Y2L1	958 aa	Known RBP	13.57	□□□□□ -0.24
VPS33B-204	ENST00000554660	TTC28	Q96AY4	2481 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	GRXCR1	A8MXD5	290 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	DCDC2C	A8MYV0	355 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	USP17L12	C9JPN9	530 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	USP17L21	D6R901	530 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	ADCY6	O43306	1168 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	IFIT2	P09913	472 aa	Known RBP	13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	MCM4	P33991	863 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	KCNA10	Q16322	511 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	CLASRP	Q8N2M8	674 aa	Known RBP	13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	PPM1E	Q8WY54	764 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	BOLA2	Q9H3K6	86 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	KANSL2	Q9H9L4	492 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	GOPC	Q9HD26	462 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	PAG1	Q9NWQ8	432 aa		13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	GREB1L	Q9C091	1923 aa	Predicted RBP	13.56	□□□□□ -0.24
VPS33B-204	ENST00000554660	MOXD2P	A6NHM9	499 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	CDC45	O75419	566 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	SNAI1	O95863	264 aa	Predicted RBP	13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	TIMP1	P01033	207 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	COPB2	P35606	906 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	HSP90AB4P	Q58FF6	505 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	SNRNP48	Q6IEG0	339 aa	Known RBP	13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	CCSAP	Q6IQ19	270 aa	Predicted RBP	13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	AMOTL1	Q8IY63	956 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	KLHDC9	Q8NEP7	349 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	NUP133	Q8WUM0	1156 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	KIF1BP	Q96EK5	621 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	TOX2	Q96NM4	488 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	TSEN34	Q9BSV6	310 aa	Known RBP	13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	TEX13B	Q9BXU2	312 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	PBX4	Q9BYU1	374 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	LNPK	Q9C0E8	428 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	SLK	Q9H2G2	1235 aa	Predicted RBP	13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	FAM184B	Q9ULE4	1060 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	RIPK3	Q9Y572	518 aa		13.55	□□□□□ -0.24
VPS33B-204	ENST00000554660	CHD9	Q3L8U1	2897 aa		13.54	□□□□□ -0.24
VPS33B-204	ENST00000554660	TNFRSF10A	O00220	468 aa		13.54	□□□□□ -0.24
VPS33B-204	ENST00000554660	C6orf222	P0C671	652 aa	Predicted RBP	13.54	□□□□□ -0.24
VPS33B-204	ENST00000554660	CSF2RA	P15509	400 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms