RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 MKNK2Q9HBH9 465 aa12.62□□□□□ -0.39
SHMT2-215ENST00000554656 PDLIM7Q9NR12 457 aa12.62□□□□□ -0.39
SHMT2-215ENST00000554656 SLC5A4Q9NY91 659 aa12.62□□□□□ -0.39
SHMT2-215ENST00000554656 DIS3Q9Y2L1 958 aaKnown RBP12.62□□□□□ -0.39
SHMT2-215ENST00000554656 SALL3Q9BXA9 1300 aa12.62□□□□□ -0.39
SHMT2-215ENST00000554656 DNAJC25-GNG10A0A024R161 153 aa12.61□□□□□ -0.39
SHMT2-215ENST00000554656 PGK1P00558 417 aa12.61□□□□□ -0.39
SHMT2-215ENST00000554656 MYCNP04198 464 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-215ENST00000554656 ZFYP08048 801 aaPredicted RBP12.61□□□□□ -0.39
SHMT2-215ENST00000554656 TDO2P48775 406 aa12.61□□□□□ -0.39
SHMT2-215ENST00000554656 SNRNP48Q6IEG0 339 aaKnown RBP12.61□□□□□ -0.39
SHMT2-215ENST00000554656 FGD4Q96M96 766 aa12.61□□□□□ -0.39
SHMT2-215ENST00000554656 MTMR4Q9NYA4 1195 aa12.61□□□□□ -0.39
SHMT2-215ENST00000554656 CLIP2Q9UDT6 1046 aa12.61□□□□□ -0.39
SHMT2-215ENST00000554656 NRBP1Q9UHY1 535 aa12.61□□□□□ -0.39
SHMT2-215ENST00000554656 PHF24Q9UPV7 400 aa12.61□□□□□ -0.39
SHMT2-215ENST00000554656 CUL9Q8IWT3 2517 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 TRIM43BA6NCK2 446 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 IGHDP01880 384 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 COPB2P35606 906 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 KCTD2Q14681 263 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 C9orf50Q5SZB4 431 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.6□□□□□ -0.39
SHMT2-215ENST00000554656 SMC5Q8IY18 1101 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 IFNL3Q8IZI9 196 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 LRRC47Q8N1G4 583 aaKnown RBP12.6□□□□□ -0.39
SHMT2-215ENST00000554656 TRIM43Q96BQ3 446 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-215ENST00000554656 LBHD1Q9BQE6 289 aaPredicted RBP12.6□□□□□ -0.39
SHMT2-215ENST00000554656 TEX13BQ9BXU2 312 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 XPNPEP3Q9NQH7 507 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 TACC3Q9Y6A5 838 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 TTC41PQ6P2S7 1318 aa12.6□□□□□ -0.39
SHMT2-215ENST00000554656 UNC80Q8N2C7 3258 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 PATL2C9JE40 543 aaKnown RBP12.59□□□□□ -0.39
SHMT2-215ENST00000554656 ATP2A1O14983 1001 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 ADCY6O43306 1168 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 ADAMTS4O75173 837 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 SNAI1O95863 264 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-215ENST00000554656 RARBP10826 455 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 GNAT2P19087 354 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 ITGB8P26012 769 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 IRX5P78411 483 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-215ENST00000554656 TLE2Q04725 743 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 ZMYM1Q5SVZ6 1142 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 C1orf53Q5VUE5 145 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 CCDC129Q6ZRS4 1044 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 RASGRP2Q7LDG7 609 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 PRPF38AQ8NAV1 312 aaKnown RBP12.59□□□□□ -0.39
SHMT2-215ENST00000554656 SLC17A8Q8NDX2 589 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 BADQ92934 168 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 MKL1Q969V6 931 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 SLC38A10Q9HBR0 1119 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 RAVER2Q9HCJ3 691 aaKnown RBP12.59□□□□□ -0.39
SHMT2-215ENST00000554656 PRDM5Q9NQX1 630 aaPredicted RBP12.59□□□□□ -0.39
SHMT2-215ENST00000554656 STXBP5LQ9Y2K9 1186 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 EYSQ5T1H1 3165 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 SYNRGQ9UMZ2 1314 aa12.59□□□□□ -0.39
SHMT2-215ENST00000554656 A0A1W2PQ45 241 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-215ENST00000554656 A0A1W2PQY0 241 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 MYADML2A6NDP7 307 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 POTEB2H3BUK9 544 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 APPP05067 770 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 AKR1A1P14550 325 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 SHHQ15465 462 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 MAMDC4Q6UXC1 1216 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 CPXCR1Q8N123 301 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 GMCL1P1Q8NEA9 526 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 NEDD1Q8NHV4 660 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 KIFC2Q96AC6 838 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 GUCD1Q96NT3 240 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 FSD1Q9BTV5 496 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.58□□□□□ -0.4
SHMT2-215ENST00000554656 SYNGAP1Q96PV0 1343 aa12.58□□□□□ -0.4
SHMT2-215ENST00000554656 TTLL1O95922 423 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 MX1P20591 662 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 SLC4A3P48751 1232 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 EPHB4P54760 987 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 PPARAQ07869 468 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 FAM109BQ6ICB4 259 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-215ENST00000554656 CCSAPQ6IQ19 270 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-215ENST00000554656 ZNF444Q8N0Y2 327 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-215ENST00000554656 KLHDC9Q8NEP7 349 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 CHMP4CQ96CF2 233 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 INCENPQ9NQS7 918 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 PRKAG2Q9UGJ0 569 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 FEM1BQ9UK73 627 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 SYNPO2Q9UMS6 1093 aa12.57□□□□□ -0.4
SHMT2-215ENST00000554656 CDH23Q9H251 3354 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 ERC2O15083 957 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 ZBED4O75132 1171 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 TFAP4Q01664 338 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 VPS53Q5VIR6 699 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 SLFN13Q68D06 897 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 ZNF467Q7Z7K2 595 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-215ENST00000554656 RNF180Q86T96 592 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 MSL3Q8N5Y2 521 aaKnown RBP12.56□□□□□ -0.4
SHMT2-215ENST00000554656 DDX11Q96FC9 970 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 KATNBL1Q9H079 304 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 NAPBQ9H115 298 aa12.56□□□□□ -0.4
SHMT2-215ENST00000554656 CNPY2Q9Y2B0 182 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms