RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 USP42Q9H9J4 1324 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 NPHP4O75161 1426 aaPredicted RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 USP6P35125 1406 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 RICTORQ6R327 1708 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 A0A0G2JLW4 131 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 BECN2A8MW95 431 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 H3BQV1 296 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 MEN1O00255 615 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 FANCGO15287 622 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 SASH1O94885 1247 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 PCSK2P16519 638 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 CDC25BP30305 580 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 GOLGA8FQ08AF8 430 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 GOLGA8DPQ0D2H9 430 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 SNW1Q13573 536 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 C4orf17Q53FE4 359 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 E4F1Q66K89 784 aaPredicted RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 ISM2Q6H9L7 571 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 C3orf58Q8NDZ4 430 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 NEDD1Q8NHV4 660 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 SNX29Q8TEQ0 813 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 EVI5LQ96CN4 794 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 FSD1Q9BTV5 496 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 ZNF395Q9H8N7 513 aaPredicted RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 KBTBD4Q9NVX7 518 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 FHOD1Q9Y613 1164 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 MRPL42Q9Y6G3 142 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 TTC41PQ6P2S7 1318 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 IGSF1Q8N6C5 1336 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 CACNA1FO60840 1977 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 KDRP35968 1356 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 FMN2Q9NZ56 1722 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 BIN1O00499 593 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 POLR3GO15318 223 aaPredicted RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 SEC31AO94979 1220 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 SLU7O95391 586 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 RPLP1P05386 114 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 PDCP20941 246 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 ITGB7P26010 798 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 IDH3AP50213 366 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 HNRNPH2P55795 449 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 CCT2P78371 535 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 SCRN1Q12765 414 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 LRP8Q14114 963 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 BMS1Q14692 1282 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 STX1AQ16623 288 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 IER5Q5VY09 327 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 ARMCX5Q6P1M9 558 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 Q6ZUG5 572 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 CHST3Q7LGC8 479 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 NEK11Q8NG66 645 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 ERO1AQ96HE7 468 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 KAZALD1Q96I82 304 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 PPP1R13BQ96KQ4 1090 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 USP28Q96RU2 1077 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 BCO2Q9BYV7 579 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 TMX1Q9H3N1 280 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 ZFAND3Q9H8U3 227 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 ZNF408Q9H9D4 720 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 NCOA5Q9HCD5 579 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 ZCCHC17Q9NP64 241 aaKnown RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 C9orf78Q9NZ63 289 aaPredicted RBP2.97□□□□□ -1.93
PRPF39-207ENST00000554439 MKL2Q9ULH7 1088 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 MAP3K2Q9Y2U5 619 aa2.97□□□□□ -1.93
PRPF39-207ENST00000554439 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.96□□□□□ -1.93
PRPF39-207ENST00000554439 FLT4P35916 1363 aa2.96□□□□□ -1.93
PRPF39-207ENST00000554439 SPATA31D1Q6ZQQ2 1576 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 N4BP2Q86UW6 1770 aaPredicted RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 A0A1B0GVL5 298 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 TAF5LO75529 589 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 STK10O94804 968 aaKnown RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 SMC2O95347 1197 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 CTDNEP1O95476 244 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 PNMA6AP0CW24 399 aaPredicted RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 TIMP2P16035 220 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 H2AFXP16104 143 aaPredicted RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 ATP4AP20648 1035 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 PSMA5P28066 241 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 PLA2G4AP47712 749 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 GYS2P54840 703 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 EIF4A1P60842 406 aaKnown RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 ST5P78524 1137 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 AIMP1Q12904 312 aaKnown RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 GRM2Q14416 872 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 DPCR1Q3MIW9 517 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 ARHGAP29Q52LW3 1261 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 SOGA3Q5TF21 947 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 TAF3Q5VWG9 929 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 OTUD7BQ6GQQ9 843 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 PDE12Q6L8Q7 609 aaKnown RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 SARM1Q6SZW1 724 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 TMC6Q7Z403 805 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 MRFAP1L1Q96HT8 127 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 SUCLG2Q96I99 432 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 TIGD1Q96MW7 591 aa2.96□□□□□ -1.94
PRPF39-207ENST00000554439 TRIM56Q9BRZ2 755 aaKnown RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 NOL10Q9BSC4 688 aaKnown RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 XPO4Q9C0E2 1151 aaKnown RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 BICC1Q9H694 974 aaKnown RBP2.96□□□□□ -1.94
PRPF39-207ENST00000554439 ADAMTS1Q9UHI8 967 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms