RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 EPSTI1Q96J88 318 aa14.59□□□□□ -0.07
VIPAS39-206ENST00000553888 ZNF70Q9UC06 446 aaPredicted RBP14.59□□□□□ -0.07
VIPAS39-206ENST00000553888 M0R2N6 131 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 CTAGE5O15320 804 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 EGFRP00533 1210 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 PTGDRQ13258 359 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 CCDC96Q2M329 555 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 RRP36Q96EU6 259 aaKnown RBP14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 A0A087X0B3 334 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 PRELPP51888 382 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 INF2Q27J81 1249 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 NBPF9Q3BBW0 867 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 TAOK3Q9H2K8 898 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 KIAA1468Q9P260 1216 aa14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 SRPRBQ9Y5M8 271 aaKnown RBP14.58□□□□□ -0.08
VIPAS39-206ENST00000553888 SMCHD1A6NHR9 2005 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 POLR2DO15514 142 aaKnown RBP14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 SNHG28P0DPA3 235 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 ZNF543Q08ER8 600 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 IL17AQ16552 155 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 UVSSAQ2YD98 709 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 DPCR1Q3MIW9 517 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 METTL16Q86W50 562 aaKnown RBP14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 CCDC125Q86Z20 511 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 NLGN2Q8NFZ4 835 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 NUP88Q99567 741 aaPredicted RBP14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 TMEM39BQ9GZU3 492 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 NOL7Q9UMY1 257 aaKnown RBP14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 MYO3BQ8WXR4 1341 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 CNTNAP1P78357 1384 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 ARFGEF1Q9Y6D6 1849 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 VWA3AA6NCI4 1184 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 PPP1R11O60927 126 aaPredicted RBP14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 GH2P01242 217 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 STX1AQ16623 288 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 TATDN1Q6P1N9 297 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 ADGRF4Q8IZF3 695 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 OGFOD1Q8N543 542 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 SGIP1Q9BQI5 828 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 LZTS2Q9BRK4 669 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 RIOX1Q9H6W3 641 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 SH3GLB2Q9NR46 395 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 TMEM260Q9NX78 707 aa14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 SEC63Q9UGP8 760 aaKnown RBP14.57□□□□□ -0.08
VIPAS39-206ENST00000553888 CALML3P27482 149 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 SNAP25P60880 206 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 GRIPAP1Q4V328 841 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 RBM26Q5T8P6 1007 aaKnown RBP14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 CNPY4Q8N129 248 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 JMJD4Q9H9V9 463 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 SERTAD1Q9UHV2 236 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 FAM237AA0A1B0GTK4 181 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 SMCO2A6NFE2 343 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 USP17L10C9JJH3 530 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 PRR29P0C7W0 189 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 ABCB5Q2M3G0 1257 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 MIGA2Q7L4E1 593 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 FOXP4Q8IVH2 680 aaPredicted RBP14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 CEP131Q9UPN4 1083 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 ATRNL1Q5VV63 1379 aa14.56□□□□□ -0.08
VIPAS39-206ENST00000553888 ENTPD3O75355 529 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 TAL1P17542 331 aaPredicted RBP14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 CDC25AP30304 524 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 ICA1Q05084 483 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 ASPRV1Q53RT3 343 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 KRBA2Q6ZNG9 492 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 CCDC17Q96LX7 622 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 BIN2Q9UBW5 565 aaPredicted RBP14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 HDAC9Q9UKV0 1011 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 CCDC194A0A1B0GVG4 234 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 IQCB1Q15051 598 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 JAKMIP3Q5VZ66 844 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 CNNM3Q8NE01 707 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 SYMPKQ92797 1274 aaKnown RBP14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 PTGER2P43116 358 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 ATP2C1P98194 919 aaPredicted RBP14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 SPDYE2Q495Y8 402 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 CCDC148Q8NFR7 591 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 ZMYND12Q9H0C1 365 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 TMEM60Q9H2L4 133 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 TMOD2Q9NZR1 351 aa14.55□□□□□ -0.08
VIPAS39-206ENST00000553888 ASTN2O75129 1339 aaPredicted RBP14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 NPM3O75607 178 aaKnown RBP14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 CASP1P29466 404 aa14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 CIAPIN1Q6FI81 312 aa14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 A0A1W2PRG0 241 aa14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 WNT10BO00744 389 aa14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 SOGA3Q5TF21 947 aa14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 CCDC84Q86UT8 332 aaPredicted RBP14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 DHX40Q8IX18 779 aaKnown RBP14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 SPICE1Q8N0Z3 855 aa14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 JDP2Q8WYK2 163 aa14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 DHX58Q96C10 678 aa14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 FAM13BQ9NYF5 915 aa14.54□□□□□ -0.08
VIPAS39-206ENST00000553888 ECE1P42892 770 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 SLFN13Q68D06 897 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 AOPEPQ8N6M6 819 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 C4orf32Q8N8J7 132 aa14.53□□□□□ -0.08
VIPAS39-206ENST00000553888 SPC24Q8NBT2 197 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms