RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 RPN1P04843 607 aaKnown RBP8.47□□□□□ -1.05
LIMA1-213ENST00000552720 GTF2E1P29083 439 aaPredicted RBP8.47□□□□□ -1.05
LIMA1-213ENST00000552720 PAK1Q13153 545 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 KCNJ12Q14500 433 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 SF3B3Q15393 1217 aaKnown RBP8.47□□□□□ -1.05
LIMA1-213ENST00000552720 KIF4BQ2VIQ3 1234 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 TCP11X2Q5H9J9 407 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 PTF1AQ7RTS3 328 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 SRGAP1Q7Z6B7 1085 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 FBXO33Q7Z6M2 555 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 IRF2BP1Q8IU81 584 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 NEK11Q8NG66 645 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 UBXN6Q9BZV1 441 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 TMEM60Q9H2L4 133 aa8.47□□□□□ -1.05
LIMA1-213ENST00000552720 LIMA1Q9UHB6 759 aaKnown RBP8.47□□□□□ -1.05
LIMA1-213ENST00000552720 NRAPQ86VF7 1730 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 GTPBP6O43824 516 aaPredicted RBP8.46□□□□□ -1.05
LIMA1-213ENST00000552720 ORC4O43929 436 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 BMP15O95972 392 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 TPM1P09493 284 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 RHOXF2BP0C7M4 288 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 CYP2C19P33261 490 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 TXLNAP40222 546 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 ARHGAP25P42331 645 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 TFAP4Q01664 338 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 SMC1AQ14683 1233 aaKnown RBP8.46□□□□□ -1.05
LIMA1-213ENST00000552720 LONRF2Q1L5Z9 754 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 NAALADL2Q58DX5 795 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 ZNF658Q5TYW1 1059 aaPredicted RBP8.46□□□□□ -1.05
LIMA1-213ENST00000552720 WWC2Q6AWC2 1192 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 CNGA4Q8IV77 575 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 RHOXF2Q9BQY4 288 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 NAA15Q9BXJ9 866 aaKnown RBP8.46□□□□□ -1.05
LIMA1-213ENST00000552720 ARFGAP3Q9NP61 516 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 MCM9Q9NXL9 1143 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.46□□□□□ -1.05
LIMA1-213ENST00000552720 RWDD2AQ9UIY3 292 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 CDC23Q9UJX2 597 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 REXO2Q9Y3B8 237 aaKnown RBP8.46□□□□□ -1.05
LIMA1-213ENST00000552720 MAST2Q6P0Q8 1798 aa8.46□□□□□ -1.05
LIMA1-213ENST00000552720 USP17L3A6NCW0 530 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 USP17L4A6NCW7 530 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 H3BQF6 201 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 SEMA3EO15041 775 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 KRT9P35527 623 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 STAT6P42226 847 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 UBXN1Q04323 297 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 USP17L1Q7RTZ2 530 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 BLIDQ8IZY5 108 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 SLC44A5Q8NCS7 719 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 CRNKL1Q9BZJ0 848 aaKnown RBP8.46□□□□□ -1.06
LIMA1-213ENST00000552720 SRP68Q9UHB9 627 aaKnown RBP8.46□□□□□ -1.06
LIMA1-213ENST00000552720 ZNF652Q9Y2D9 606 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 ITIH6Q6UXX5 1313 aa8.46□□□□□ -1.06
LIMA1-213ENST00000552720 LRRC10BA6NIK2 292 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 PES1O00541 588 aaKnown RBP8.45□□□□□ -1.06
LIMA1-213ENST00000552720 NKRFO15226 690 aaKnown RBP eCLIP8.45□□□□□ -1.06
LIMA1-213ENST00000552720 CYTH3O43739 400 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 GOLGA8HP0CJ92 632 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 HIBADHP31937 336 aaKnown RBP8.45□□□□□ -1.06
LIMA1-213ENST00000552720 GRIK5Q16478 980 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 INF2Q27J81 1249 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 CT47A1Q5JQC4 288 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-213ENST00000552720 NCAPH2Q6IBW4 605 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 PNMA1Q8ND90 353 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 NAV1Q8NEY1 1877 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 TTC26A0AVF1 554 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 CTAGE9A4FU28 777 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 ENC1O14682 589 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 PARP1P09874 1014 aaKnown RBP8.45□□□□□ -1.06
LIMA1-213ENST00000552720 FECHP22830 423 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 RPS8P62241 208 aaKnown RBP8.45□□□□□ -1.06
LIMA1-213ENST00000552720 DIXDC1Q155Q3 683 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 NOA1Q8NC60 698 aaKnown RBP8.45□□□□□ -1.06
LIMA1-213ENST00000552720 RASSF8Q8NHQ8 419 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 GPR101Q96P66 508 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-213ENST00000552720 KAT14Q9H8E8 782 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 DISC1Q9NRI5 854 aa8.45□□□□□ -1.06
LIMA1-213ENST00000552720 M0R2N6 131 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 PCP11498 1178 aaKnown RBP8.44□□□□□ -1.06
LIMA1-213ENST00000552720 TRAPPC10P48553 1259 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 KLK7P49862 253 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 MCM6Q14566 821 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 AMIGO3Q86WK7 504 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 TMTC1Q8IUR5 882 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 TRERF1Q96PN7 1200 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 ATP8A2Q9NTI2 1148 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 ARPP21Q9UBL0 812 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-213ENST00000552720 HDAC6Q9UBN7 1215 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 MAD2L2Q9UI95 211 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 GUCA1BQ9UMX6 200 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 PCDHA6Q9UN73 950 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 PCDHA4Q9UN74 947 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 PCDHA8Q9Y5H6 950 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 TNRC6CQ9HCJ0 1690 aaKnown RBP8.44□□□□□ -1.06
LIMA1-213ENST00000552720 CCDC151A5D8V7 595 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 KLRC4O43908 158 aa8.44□□□□□ -1.06
LIMA1-213ENST00000552720 N4BP1O75113 896 aaKnown RBP8.44□□□□□ -1.06
LIMA1-213ENST00000552720 LONP1P36776 959 aaKnown RBP8.44□□□□□ -1.06
LIMA1-213ENST00000552720 VSNL1P62760 191 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms