RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 FAM151AQ8WW52 585 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 LBHD1Q9BQE6 289 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-204ENST00000549064 KRTAP3-3Q9BYR6 98 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 KRTAP3-2Q9BYR7 98 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 PUS3Q9BZE2 481 aaKnown RBP8.2□□□□□ -1.1
LIMA1-204ENST00000549064 MYH16Q9H6N6 1097 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 IFT57Q9NWB7 429 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 GJD2Q9UKL4 321 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 AFG3L2Q9Y4W6 797 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 LOC285556D6RIA3 1793 aa8.2□□□□□ -1.1
LIMA1-204ENST00000549064 TRIM75PA6NK02 468 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 PHF20L1A8MW92 1017 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 CYP2B6P20813 491 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 GDF10P55107 478 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 GNAI1P63096 354 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 FAM110CQ1W6H9 321 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 TREML2Q5T2D2 321 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 CDC42EP5Q6NZY7 148 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 OSBPL3Q9H4L5 887 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 CYLDQ9NQC7 956 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 SERTAD1Q9UHV2 236 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 SLC45A1Q9Y2W3 748 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 ATAD5Q96QE3 1844 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 ATRNL1Q5VV63 1379 aa8.19□□□□□ -1.1
LIMA1-204ENST00000549064 PEX10O60683 326 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 FRAT2O75474 233 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-204ENST00000549064 CCND3P30281 292 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-204ENST00000549064 ERVK-9P63128 1117 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 SKOR1P84550 965 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 MAP3K12Q12852 859 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 ARID5BQ14865 1188 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 CCDC57Q2TAC2 916 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 MAP3K21Q5TCX8 1036 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 HHIPL2Q6UWX4 724 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 VPS37DQ86XT2 251 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 RGL4Q8IZJ4 473 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 LINS1Q8NG48 757 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 TBC1D22AQ8WUA7 517 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 DNAAF4Q8WXU2 420 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 COL26A1Q96A83 441 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 STK31Q9BXU1 1019 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 TSPAN10Q9H1Z9 355 aaPredicted RBP8.18□□□□□ -1.1
LIMA1-204ENST00000549064 PICK1Q9NRD5 415 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 TMPRSS4Q9NRS4 437 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 ADAMTS8Q9UP79 889 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 AGTPBP1Q9UPW5 1226 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 DAGLAQ9Y4D2 1042 aa8.18□□□□□ -1.1
LIMA1-204ENST00000549064 RLFQ13129 1914 aa8.17□□□□□ -1.1
LIMA1-204ENST00000549064 ZBTB24O43167 697 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-204ENST00000549064 MPSTP25325 297 aa8.17□□□□□ -1.1
LIMA1-204ENST00000549064 CACNB2Q08289 660 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-204ENST00000549064 TSR2Q969E8 191 aaKnown RBP8.17□□□□□ -1.1
LIMA1-204ENST00000549064 VTI1AQ96AJ9 217 aa8.17□□□□□ -1.1
LIMA1-204ENST00000549064 MRIQ9BWK5 157 aa8.17□□□□□ -1.1
LIMA1-204ENST00000549064 SENP6Q9GZR1 1112 aaPredicted RBP8.17□□□□□ -1.1
LIMA1-204ENST00000549064 SAP130Q9H0E3 1048 aa8.17□□□□□ -1.1
LIMA1-204ENST00000549064 MAST3O60307 1309 aa8.17□□□□□ -1.1
LIMA1-204ENST00000549064 MYH2Q9UKX2 1941 aa8.17□□□□□ -1.1
LIMA1-204ENST00000549064 F6X3S4 739 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 APAF1O14727 1248 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 CACNA1FO60840 1977 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 FAM13AO94988 1023 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 RECKO95980 971 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 VAMP1P23763 118 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 VARSP26640 1264 aaKnown RBP8.16□□□□□ -1.1
LIMA1-204ENST00000549064 WDR43Q15061 677 aaKnown RBP eCLIP8.16□□□□□ -1.1
LIMA1-204ENST00000549064 CCL14Q16627 93 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 TBCELQ5QJ74 424 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 PLA2G2CQ5R387 149 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 TCF20Q9UGU0 1960 aaKnown RBP8.16□□□□□ -1.1
LIMA1-204ENST00000549064 MAP4K5Q9Y4K4 846 aa8.16□□□□□ -1.1
LIMA1-204ENST00000549064 BACH1O14867 736 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 P4HBP07237 508 aaKnown RBP8.15□□□□□ -1.1
LIMA1-204ENST00000549064 ZKSCAN1P17029 563 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-204ENST00000549064 FSHRP23945 695 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 EPHA4P54764 986 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 RTP1P59025 263 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 SMAD3P84022 425 aaKnown RBP8.15□□□□□ -1.1
LIMA1-204ENST00000549064 GRIN2CQ14957 1233 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 LRRC24Q50LG9 513 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 CAVIN4Q5BKX8 364 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 TMC7Q7Z402 723 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 PPM1EQ8WY54 764 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 BADQ92934 168 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 ASCC2Q9H1I8 757 aaPredicted RBP8.15□□□□□ -1.1
LIMA1-204ENST00000549064 ETNK1Q9HBU6 452 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 USP40Q9NVE5 1235 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 LRRFIP2Q9Y608 721 aaKnown RBP8.15□□□□□ -1.1
LIMA1-204ENST00000549064 NCOR1O75376 2440 aa8.15□□□□□ -1.1
LIMA1-204ENST00000549064 XIRP2A4UGR9 3374 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 MROH5Q6ZUA9 1318 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 DDTLA6NHG4 134 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-204ENST00000549064 NPR3P17342 541 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 PRDX5P30044 214 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 GCLCP48506 637 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-204ENST00000549064 RGS3P49796 1198 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 HMGCS2P54868 508 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 TSNAXIP1Q2TAA8 658 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 TWISTNBQ3B726 338 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-204ENST00000549064 CHMP4AQ9BY43 222 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms