RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 TSPY3P0CV98 308 aa20.7■□□□□ 0.9
CHMP1A-205ENST00000548650 TSPY8P0CW00 308 aa20.7■□□□□ 0.9
CHMP1A-205ENST00000548650 RTP1P59025 263 aa20.7■□□□□ 0.9
CHMP1A-205ENST00000548650 ANKRD45Q5TZF3 282 aa20.7■□□□□ 0.9
CHMP1A-205ENST00000548650 PRPF38AQ8NAV1 312 aaKnown RBP20.7■□□□□ 0.9
CHMP1A-205ENST00000548650 UBE2OQ9C0C9 1292 aaKnown RBP20.7■□□□□ 0.9
CHMP1A-205ENST00000548650 LRRC37A2A6NM11 1700 aa20.7■□□□□ 0.9
CHMP1A-205ENST00000548650 SLC3A2P08195 630 aaKnown RBP20.69■□□□□ 0.9
CHMP1A-205ENST00000548650 TAL1P17542 331 aaPredicted RBP20.69■□□□□ 0.9
CHMP1A-205ENST00000548650 SNX17Q15036 470 aa20.69■□□□□ 0.9
CHMP1A-205ENST00000548650 LRRC41Q15345 812 aa20.69■□□□□ 0.9
CHMP1A-205ENST00000548650 LRIT3Q3SXY7 679 aa20.69■□□□□ 0.9
CHMP1A-205ENST00000548650 KIFC2Q96AC6 838 aa20.69■□□□□ 0.9
CHMP1A-205ENST00000548650 SLC38A10Q9HBR0 1119 aa20.69■□□□□ 0.9
CHMP1A-205ENST00000548650 DNAJC25-GNG10A0A024R161 153 aa20.68■□□□□ 0.9
CHMP1A-205ENST00000548650 PDE1AP54750 535 aa20.68■□□□□ 0.9
CHMP1A-205ENST00000548650 MDM2Q00987 491 aaPredicted RBP20.68■□□□□ 0.9
CHMP1A-205ENST00000548650 TFAP4Q01664 338 aa20.68■□□□□ 0.9
CHMP1A-205ENST00000548650 VPS53Q5VIR6 699 aa20.68■□□□□ 0.9
CHMP1A-205ENST00000548650 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.68■□□□□ 0.9
CHMP1A-205ENST00000548650 EVI5LQ96CN4 794 aa20.68■□□□□ 0.9
CHMP1A-205ENST00000548650 FEM1BQ9UK73 627 aa20.68■□□□□ 0.9
CHMP1A-205ENST00000548650 MYCNP04198 464 aaPredicted RBP20.67■□□□□ 0.9
CHMP1A-205ENST00000548650 ZNF865P0CJ78 1059 aaPredicted RBP20.67■□□□□ 0.9
CHMP1A-205ENST00000548650 RARBP10826 455 aa20.67■□□□□ 0.9
CHMP1A-205ENST00000548650 SLFN13Q68D06 897 aa20.67■□□□□ 0.9
CHMP1A-205ENST00000548650 CPXCR1Q8N123 301 aa20.67■□□□□ 0.9
CHMP1A-205ENST00000548650 LENG1Q96BZ8 264 aaPredicted RBP20.67■□□□□ 0.9
CHMP1A-205ENST00000548650 RAVER2Q9HCJ3 691 aaKnown RBP20.67■□□□□ 0.9
CHMP1A-205ENST00000548650 XPNPEP3Q9NQH7 507 aa20.67■□□□□ 0.9
CHMP1A-205ENST00000548650 ZBTB47Q9UFB7 747 aaPredicted RBP20.67■□□□□ 0.9
CHMP1A-205ENST00000548650 ZBED4O75132 1171 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 BMP3P12645 472 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 OAZ1P54368 228 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 CTDSPL2Q05D32 466 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 SLC39A5Q6ZMH5 540 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 MSL3Q8N5Y2 521 aaKnown RBP20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 GMCL1Q96IK5 515 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 PHF24Q9UPV7 400 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 ATP11BQ9Y2G3 1177 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 TACC3Q9Y6A5 838 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 SYNGAP1Q96PV0 1343 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 LAMA4Q16363 1823 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 LCTP09848 1927 aa20.66■□□□□ 0.9
CHMP1A-205ENST00000548650 AKR1A1P14550 325 aa20.65■□□□□ 0.9
CHMP1A-205ENST00000548650 ADCYAP1R1P41586 468 aa20.65■□□□□ 0.9
CHMP1A-205ENST00000548650 TRIM60Q495X7 471 aa20.65■□□□□ 0.9
CHMP1A-205ENST00000548650 GPR153Q6NV75 609 aa20.65■□□□□ 0.9
CHMP1A-205ENST00000548650 MAMDC4Q6UXC1 1216 aa20.65■□□□□ 0.9
CHMP1A-205ENST00000548650 FGD4Q96M96 766 aa20.65■□□□□ 0.9
CHMP1A-205ENST00000548650 ANAPC4Q9UJX5 808 aa20.65■□□□□ 0.9
CHMP1A-205ENST00000548650 CNPY2Q9Y2B0 182 aa20.65■□□□□ 0.9
CHMP1A-205ENST00000548650 A0A0D9SFI3 127 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 PGK1P00558 417 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 STAT2P52630 851 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 RASGRP2Q7LDG7 609 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 FERMT2Q96AC1 680 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 DDX11Q96FC9 970 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 FAM227BQ96M60 508 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 INCENPQ9NQS7 918 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 IL17RBQ9NRM6 502 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 HELLSQ9NRZ9 838 aa20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 CTDP1Q9Y5B0 961 aaPredicted RBP20.64■□□□□ 0.89
CHMP1A-205ENST00000548650 TSPY2A6NKD2 308 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 TMEM232C9JQI7 657 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 NMT2O60551 498 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 ADAMTS4O75173 837 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 SNAI1O95863 264 aaPredicted RBP20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 SLC4A3P48751 1232 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 PPP4R3BQ5MIZ7 849 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 C1orf53Q5VUE5 145 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 ZNF467Q7Z7K2 595 aaPredicted RBP20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 CHST13Q8NET6 341 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 PDLIM7Q9NR12 457 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 FBXO40Q9UH90 709 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 STX8Q9UNK0 236 aa20.63■□□□□ 0.89
CHMP1A-205ENST00000548650 ZNF536O15090 1300 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 ZMYM6O95789 1325 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 SYNRGQ9UMZ2 1314 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 ORC4O43929 436 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 SLC1A4P43007 532 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 NOVP48745 357 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 ALX1Q15699 326 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 RNF180Q86T96 592 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 FAM160B2Q86V87 743 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 LBHD1Q9BQE6 289 aaPredicted RBP20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 LNPKQ9C0E8 428 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 PRKAG2Q9UGJ0 569 aa20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 ZHX1Q9UKY1 873 aaPredicted RBP20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 ISY1Q9ULR0 285 aaKnown RBP20.62■□□□□ 0.89
CHMP1A-205ENST00000548650 A0A1W2PQ45 241 aaPredicted RBP20.61■□□□□ 0.89
CHMP1A-205ENST00000548650 A0A1W2PQY0 241 aa20.61■□□□□ 0.89
CHMP1A-205ENST00000548650 FGRP09769 529 aa20.61■□□□□ 0.89
CHMP1A-205ENST00000548650 FDX1P10109 184 aa20.61■□□□□ 0.89
CHMP1A-205ENST00000548650 SMC5Q8IY18 1101 aa20.61■□□□□ 0.89
CHMP1A-205ENST00000548650 ANKRD35Q8N283 1001 aa20.61■□□□□ 0.89
CHMP1A-205ENST00000548650 YTHDC1Q96MU7 727 aaKnown RBP20.61■□□□□ 0.89
CHMP1A-205ENST00000548650 PRDM5Q9NQX1 630 aaPredicted RBP20.61■□□□□ 0.89
CHMP1A-205ENST00000548650 HOMER2Q9NSB8 354 aa20.61■□□□□ 0.89
CHMP1A-205ENST00000548650 PLA2G6O60733 806 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms