RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 PSMC4P43686 418 aa11.06□□□□□ -0.64
YBX3-215ENST00000544504 STK3Q13188 491 aa11.06□□□□□ -0.64
YBX3-215ENST00000544504 RAB3GAP1Q15042 981 aa11.06□□□□□ -0.64
YBX3-215ENST00000544504 NOL9Q5SY16 702 aaKnown RBP11.06□□□□□ -0.64
YBX3-215ENST00000544504 C17orf99Q6UX52 265 aa11.06□□□□□ -0.64
YBX3-215ENST00000544504 TRIM22Q8IYM9 498 aa11.06□□□□□ -0.64
YBX3-215ENST00000544504 FANCBQ8NB91 859 aa11.06□□□□□ -0.64
YBX3-215ENST00000544504 U2AF1L4Q8WU68 220 aaKnown RBP11.06□□□□□ -0.64
YBX3-215ENST00000544504 NUP133Q8WUM0 1156 aa11.06□□□□□ -0.64
YBX3-215ENST00000544504 LARP6Q9BRS8 491 aaKnown RBP11.06□□□□□ -0.64
YBX3-215ENST00000544504 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.06□□□□□ -0.64
YBX3-215ENST00000544504 AS3MTQ9HBK9 375 aa11.06□□□□□ -0.64
YBX3-215ENST00000544504 BIN2Q9UBW5 565 aaPredicted RBP11.06□□□□□ -0.64
YBX3-215ENST00000544504 CLIP2Q9UDT6 1046 aa11.06□□□□□ -0.64
YBX3-215ENST00000544504 CIZ1Q9ULV3 898 aaPredicted RBP11.06□□□□□ -0.64
YBX3-215ENST00000544504 USP17L5A8MUK1 530 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 LARGE1O95461 756 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 FMNL1O95466 1100 aaPredicted RBP11.05□□□□□ -0.64
YBX3-215ENST00000544504 EEF2P13639 858 aaKnown RBP11.05□□□□□ -0.64
YBX3-215ENST00000544504 OSBPP22059 807 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 SMARCA1P28370 1054 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 BMP8BP34820 402 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 ATP2B2Q01814 1243 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 AKAP17AQ02040 695 aaKnown RBP11.05□□□□□ -0.64
YBX3-215ENST00000544504 SCRN1Q12765 414 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 TROAPQ12815 778 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 SNAPC2Q13487 334 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 SEPT2Q15019 361 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 ASPRV1Q53RT3 343 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 GPATCH4Q5T3I0 446 aaKnown RBP11.05□□□□□ -0.64
YBX3-215ENST00000544504 CDAN1Q8IWY9 1227 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 SCYL3Q8IZE3 742 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 NECAB1Q8N987 351 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 GMCL1P1Q8NEA9 526 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 DCAF4Q8WV16 495 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 WASF1Q92558 559 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 WRNIP1Q96S55 665 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 GOPCQ9HD26 462 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 MUC3AQ02505 3323 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 MYPNQ86TC9 1320 aa11.05□□□□□ -0.64
YBX3-215ENST00000544504 SGPL1O95470 568 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 PARP1P09874 1014 aaKnown RBP11.04□□□□□ -0.64
YBX3-215ENST00000544504 IFNAR1P17181 557 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 CTGFP29279 349 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 SLC4A3P48751 1232 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 CCT2P78371 535 aaKnown RBP11.04□□□□□ -0.64
YBX3-215ENST00000544504 GRM4Q14833 912 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 ERO1BQ86YB8 467 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 FAM184AQ8NB25 1140 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 SLAIN1Q8ND83 568 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 RGS22Q8NE09 1264 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 SENP2Q9HC62 589 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 TMX2Q9Y320 296 aa11.04□□□□□ -0.64
YBX3-215ENST00000544504 OTOFQ9HC10 1997 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 IRF6O14896 467 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 ECM2O94769 699 aaPredicted RBP11.03□□□□□ -0.64
YBX3-215ENST00000544504 GUCY1A2P33402 732 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 USP14P54578 494 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 NUCB2P80303 420 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 SSRP1Q08945 709 aaKnown RBP11.03□□□□□ -0.64
YBX3-215ENST00000544504 LRIT3Q3SXY7 679 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 Q7L0L9 218 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.03□□□□□ -0.64
YBX3-215ENST00000544504 NSUN7Q8NE18 718 aaKnown RBP11.03□□□□□ -0.64
YBX3-215ENST00000544504 SMARCC2Q8TAQ2 1214 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 GMCL1Q96IK5 515 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 FEZ1Q99689 392 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 GDF15Q99988 308 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 MYL10Q9BUA6 226 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 WDR18Q9BV38 432 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 RNF26Q9BY78 433 aaPredicted RBP11.03□□□□□ -0.64
YBX3-215ENST00000544504 KIAA1683Q9H0B3 1180 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 NCOA5Q9HCD5 579 aaKnown RBP11.03□□□□□ -0.64
YBX3-215ENST00000544504 MTMR10Q9NXD2 777 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 CPA4Q9UI42 421 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 SNCAIPQ9Y6H5 919 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 DOCK1Q14185 1865 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 STK36Q9NRP7 1315 aa11.03□□□□□ -0.64
YBX3-215ENST00000544504 MYH4Q9Y623 1939 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 PTPDC1A2A3K4 754 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 C19orf81C9J6K1 198 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 SLURP2P0DP57 97 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 SNHG28P0DPA3 235 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 XBP1P17861 261 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 ADD1P35611 737 aaKnown RBP11.02□□□□□ -0.65
YBX3-215ENST00000544504 PPIL2Q13356 520 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 RRP1BQ14684 758 aaKnown RBP11.02□□□□□ -0.65
YBX3-215ENST00000544504 SLFN13Q68D06 897 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 TMTC3Q6ZXV5 915 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 FAM177A1Q8N128 213 aaPredicted RBP11.02□□□□□ -0.65
YBX3-215ENST00000544504 LRRC47Q8N1G4 583 aaKnown RBP11.02□□□□□ -0.65
YBX3-215ENST00000544504 SPRYD3Q8NCJ5 442 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 LPAR1Q92633 364 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 UNC93B1Q9H1C4 597 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 CHMP5Q9NZZ3 219 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 ZSWIM8A7E2V4 1837 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 PRUNE2Q8WUY3 3088 aa11.02□□□□□ -0.65
YBX3-215ENST00000544504 ATAD5Q96QE3 1844 aa11.01□□□□□ -0.65
YBX3-215ENST00000544504 PALM3A6NDB9 673 aaPredicted RBP11.01□□□□□ -0.65
YBX3-215ENST00000544504 USP17L10C9JJH3 530 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms