RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SYDE2	Q5VT97	1194 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	CMTR1	Q8N1G2	835 aa	Known RBP	11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	NECAB1	Q8N987	351 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	PRPF38A	Q8NAV1	312 aa	Known RBP	11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	PIBF1	Q8WXW3	757 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	BEGAIN	Q9BUH8	593 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	CPVL	Q9H3G5	476 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	ZFYVE28	Q9HCC9	887 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	NCOA5	Q9HCD5	579 aa	Known RBP	11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	PPP1R9A	Q9ULJ8	1098 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	HPS5	Q9UPZ3	1129 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	SLC45A1	Q9Y2W3	748 aa		11.81	□□□□□ -0.52
CPSF7-221	ENST00000543545	PFKFB2	O60825	505 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	PLEKHA8P1	O95397	391 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	CDC27	P30260	824 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	SLC4A3	P48751	1232 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	SNAP25	P60880	206 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	HERVK_113	P62684	666 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	AKAP17A	Q02040	695 aa	Known RBP	11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	MAP2K1	Q02750	393 aa	Predicted RBP	11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	PLS1	Q14651	629 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	HSCB	Q8IWL3	235 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	ATG4C	Q96DT6	458 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	PAGR1	Q9BTK6	254 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	ZCCHC17	Q9NP64	241 aa	Known RBP	11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	PRR12	Q9ULL5	1215 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	LAMA4	Q16363	1823 aa		11.8	□□□□□ -0.52
CPSF7-221	ENST00000543545	SPDYE16	A6NNV3	312 aa	Predicted RBP	11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	PLA2G6	O60733	806 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	PPFIA3	O75145	1194 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	TRPA1	O75762	1119 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	CD2BP2	O95400	341 aa	Known RBP	11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	SCRN1	Q12765	414 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	CCDC174	Q6PII3	467 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	BTNL9	Q6UXG8	535 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	TMTC3	Q6ZXV5	915 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	HOMER1	Q86YM7	354 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	CCDC83	Q8IWF9	413 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	ADGRF4	Q8IZF3	695 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	CPXCR1	Q8N123	301 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	SRBD1	Q8N5C6	995 aa	Known RBP	11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	GTF3C2	Q8WUA4	911 aa	Predicted RBP	11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	RRP36	Q96EU6	259 aa	Known RBP	11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	RNF186	Q9NXI6	227 aa		11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	SEC63	Q9UGP8	760 aa	Known RBP	11.79	□□□□□ -0.52
CPSF7-221	ENST00000543545	DOCK1	Q14185	1865 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	VWA5A	O00534	786 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	CA12	O43570	354 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	CDKL5	O76039	1030 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	LARGE1	O95461	756 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	FDX1	P10109	184 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	GCLC	P48506	637 aa	Predicted RBP	11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	NBPF11	Q86T75	865 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	CCAR1	Q8IX12	1150 aa	Known RBP	11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	DNAJC5G	Q8N7S2	189 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	GTF3C6	Q969F1	213 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	SNX21	Q969T3	373 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	TMX3	Q96JJ7	454 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	PIGS	Q96S52	555 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	SLC26A6	Q9BXS9	759 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	JMJD4	Q9H9V9	463 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	FAM217B	Q9NTX9	383 aa	Predicted RBP	11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	CPA4	Q9UI42	421 aa		11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545		V9GY48	417 aa	Predicted RBP	11.78	□□□□□ -0.52
CPSF7-221	ENST00000543545	hCG_1642624	A0A1W2PR95	340 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	TBC1D8	O95759	1140 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	SMARCA1	P28370	1054 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	SSRP1	Q08945	709 aa	Known RBP	11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	CRHR2	Q13324	411 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	CDC37	Q16543	378 aa	Predicted RBP	11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	TRIM22	Q8IYM9	498 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	ANKRD13C	Q8N6S4	541 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	MB21D1	Q8N884	522 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	GPRC5A	Q8NFJ5	357 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	PHKB	Q93100	1093 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	SPZ1	Q9BXG8	430 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	CWC22	Q9HCG8	908 aa	Known RBP	11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	RAVER2	Q9HCJ3	691 aa	Known RBP	11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	RABGAP1	Q9Y3P9	1069 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545	MYPN	Q86TC9	1320 aa		11.77	□□□□□ -0.53
CPSF7-221	ENST00000543545		K7ELQ4	463 aa	Predicted RBP	11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	ZBTB5	O15062	677 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	CYTH3	O43739	400 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	TLR2	O60603	784 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	PEX10	O60683	326 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	ECM2	O94769	699 aa	Predicted RBP	11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	HSP90AA1	P07900	732 aa	Known RBP	11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	IFNAR1	P17181	557 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	STAT3	P40763	770 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	BECN1	Q14457	450 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	QRICH1	Q2TAL8	776 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	WDR78	Q5VTH9	848 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	LBX2	Q6XYB7	198 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	DDX11	Q96FC9	970 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	RIOX1	Q9H6W3	641 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	SLC38A10	Q9HBR0	1119 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	RBPJL	Q9UBG7	517 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	OTOF	Q9HC10	1997 aa		11.76	□□□□□ -0.53
CPSF7-221	ENST00000543545	PNMA6F	A0A0J9YX94	578 aa		11.75	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 37 ms