RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 STAG2Q8N3U4 1231 aa19.95■□□□□ 0.78
LIG1-204ENST00000542460 SMCR8Q8TEV9 937 aaPredicted RBP19.95■□□□□ 0.78
LIG1-204ENST00000542460 ZFYVE28Q9HCC9 887 aa19.95■□□□□ 0.78
LIG1-204ENST00000542460 RNF186Q9NXI6 227 aa19.95■□□□□ 0.78
LIG1-204ENST00000542460 PPP1R9AQ9ULJ8 1098 aa19.95■□□□□ 0.78
LIG1-204ENST00000542460 GOLGA8AA7E2F4 631 aa19.94■□□□□ 0.78
LIG1-204ENST00000542460 GNAQP50148 359 aa19.94■□□□□ 0.78
LIG1-204ENST00000542460 METAP2P50579 478 aaKnown RBP eCLIP19.94■□□□□ 0.78
LIG1-204ENST00000542460 HERVK_113P62684 666 aa19.94■□□□□ 0.78
LIG1-204ENST00000542460 LBX2Q6XYB7 198 aa19.94■□□□□ 0.78
LIG1-204ENST00000542460 RBM28Q9NW13 759 aaKnown RBP19.94■□□□□ 0.78
LIG1-204ENST00000542460 TPCN1Q9ULQ1 816 aa19.94■□□□□ 0.78
LIG1-204ENST00000542460 HPS5Q9UPZ3 1129 aa19.94■□□□□ 0.78
LIG1-204ENST00000542460 CCDC196A0A1B0GTZ2 297 aa19.93■□□□□ 0.78
LIG1-204ENST00000542460 SPDYE16A6NNV3 312 aaPredicted RBP19.93■□□□□ 0.78
LIG1-204ENST00000542460 SLC16A2P36021 539 aa19.93■□□□□ 0.78
LIG1-204ENST00000542460 RTN1Q16799 776 aa19.93■□□□□ 0.78
LIG1-204ENST00000542460 SAMD1Q6SPF0 538 aaPredicted RBP19.93■□□□□ 0.78
LIG1-204ENST00000542460 NOL8Q76FK4 1167 aaKnown RBP19.93■□□□□ 0.78
LIG1-204ENST00000542460 GTF3C2Q8WUA4 911 aaPredicted RBP19.93■□□□□ 0.78
LIG1-204ENST00000542460 KIFC2Q96AC6 838 aa19.93■□□□□ 0.78
LIG1-204ENST00000542460 LZTS2Q9BRK4 669 aa19.93■□□□□ 0.78
LIG1-204ENST00000542460 BEGAINQ9BUH8 593 aa19.93■□□□□ 0.78
LIG1-204ENST00000542460 UBA5Q9GZZ9 404 aa19.93■□□□□ 0.78
LIG1-204ENST00000542460 ADAMTS5Q9UNA0 930 aa19.93■□□□□ 0.78
LIG1-204ENST00000542460 LIMCH1Q9UPQ0 1083 aa19.93■□□□□ 0.78
LIG1-204ENST00000542460 TRPA1O75762 1119 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 FDX1P10109 184 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 GCLCP48506 637 aaPredicted RBP19.92■□□□□ 0.78
LIG1-204ENST00000542460 LBX1P52954 281 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 SYDE2Q5VT97 1194 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 CFHR5Q9BXR6 569 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 PRDM10Q9NQV6 1147 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 SAGE1Q9NXZ1 904 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 PRR12Q9ULL5 1215 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 NID2Q14112 1375 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 TLR2O60603 784 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 SMARCA1P28370 1054 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 MCM2P49736 904 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 CRHR2Q13324 411 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 MB21D1Q8N884 522 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 ATG4CQ96DT6 458 aa19.92■□□□□ 0.78
LIG1-204ENST00000542460 VWA5AO00534 786 aa19.91■□□□□ 0.78
LIG1-204ENST00000542460 ZBED4O75132 1171 aa19.91■□□□□ 0.78
LIG1-204ENST00000542460 HSPA8P11142 646 aaKnown RBP19.91■□□□□ 0.78
LIG1-204ENST00000542460 CDC27P30260 824 aa19.91■□□□□ 0.78
LIG1-204ENST00000542460 CCT2P78371 535 aaKnown RBP19.91■□□□□ 0.78
LIG1-204ENST00000542460 STK3Q13188 491 aa19.91■□□□□ 0.78
LIG1-204ENST00000542460 ME3Q16798 604 aa19.91■□□□□ 0.78
LIG1-204ENST00000542460 TMTC3Q6ZXV5 915 aa19.91■□□□□ 0.78
LIG1-204ENST00000542460 ADGRF4Q8IZF3 695 aa19.91■□□□□ 0.78
LIG1-204ENST00000542460 ZSCAN31Q96LW9 406 aaPredicted RBP19.91■□□□□ 0.78
LIG1-204ENST00000542460 SLKQ9H2G2 1235 aaPredicted RBP19.91■□□□□ 0.78
LIG1-204ENST00000542460 CPVLQ9H3G5 476 aa19.91■□□□□ 0.78
LIG1-204ENST00000542460 FAM217BQ9NTX9 383 aaPredicted RBP19.91■□□□□ 0.78
LIG1-204ENST00000542460 DHX16O60231 1041 aaKnown RBP19.9■□□□□ 0.78
LIG1-204ENST00000542460 PFKFB2O60825 505 aa19.9■□□□□ 0.78
LIG1-204ENST00000542460 PLEKHA8P1O95397 391 aa19.9■□□□□ 0.78
LIG1-204ENST00000542460 ADD1P35611 737 aaKnown RBP19.9■□□□□ 0.78
LIG1-204ENST00000542460 RBPJLQ9UBG7 517 aa19.9■□□□□ 0.78
LIG1-204ENST00000542460 RABGAP1Q9Y3P9 1069 aa19.9■□□□□ 0.78
LIG1-204ENST00000542460 CTDP1Q9Y5B0 961 aaPredicted RBP19.9■□□□□ 0.78
LIG1-204ENST00000542460 ADGRA2Q96PE1 1338 aa19.9■□□□□ 0.78
LIG1-204ENST00000542460 TBC1D8O95759 1140 aa19.89■□□□□ 0.77
LIG1-204ENST00000542460 POTEEQ6S8J3 1075 aa19.89■□□□□ 0.77
LIG1-204ENST00000542460 NBPF11Q86T75 865 aa19.89■□□□□ 0.77
LIG1-204ENST00000542460 SRBD1Q8N5C6 995 aaKnown RBP19.89■□□□□ 0.77
LIG1-204ENST00000542460 SPZ1Q9BXG8 430 aa19.89■□□□□ 0.77
LIG1-204ENST00000542460 RIOX1Q9H6W3 641 aa19.89■□□□□ 0.77
LIG1-204ENST00000542460 SLC38A10Q9HBR0 1119 aa19.89■□□□□ 0.77
LIG1-204ENST00000542460 VAT1LQ9HCJ6 419 aa19.89■□□□□ 0.77
LIG1-204ENST00000542460 CAPN15O75808 1086 aa19.88■□□□□ 0.77
LIG1-204ENST00000542460 CD2BP2O95400 341 aaKnown RBP19.88■□□□□ 0.77
LIG1-204ENST00000542460 C17orf99Q6UX52 265 aa19.88■□□□□ 0.77
LIG1-204ENST00000542460 CMTR1Q8N1G2 835 aaKnown RBP19.88■□□□□ 0.77
LIG1-204ENST00000542460 PAGR1Q9BTK6 254 aa19.88■□□□□ 0.77
LIG1-204ENST00000542460 RANBP17Q9H2T7 1088 aaKnown RBP19.88■□□□□ 0.77
LIG1-204ENST00000542460 JMJD4Q9H9V9 463 aa19.88■□□□□ 0.77
LIG1-204ENST00000542460 NCOA5Q9HCD5 579 aaKnown RBP19.88■□□□□ 0.77
LIG1-204ENST00000542460 SH2B1Q9NRF2 756 aaPredicted RBP19.88■□□□□ 0.77
LIG1-204ENST00000542460 CPA4Q9UI42 421 aa19.88■□□□□ 0.77
LIG1-204ENST00000542460 CYTH3O43739 400 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 LARGE1O95461 756 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 SCRN1Q12765 414 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 SLC35G1Q2M3R5 365 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 CCDC82Q8N4S0 544 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 ANKRD13CQ8N6S4 541 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 REPS2Q8NFH8 660 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 GPRC5AQ8NFJ5 357 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 R3HDMLQ9H3Y0 253 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 TXNRD2Q9NNW7 524 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 BTBD7Q9P203 1132 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 MORF4L1Q9UBU8 362 aa19.87■□□□□ 0.77
LIG1-204ENST00000542460 CPLX1O14810 134 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 ATP2A1O14983 1001 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 BCRP11274 1271 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 OAZ1P54368 228 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 TMEM132BQ14DG7 1078 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 FAM110CQ1W6H9 321 aa19.86■□□□□ 0.77
LIG1-204ENST00000542460 CPLX2Q6PUV4 134 aaKnown RBP19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms