RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 TMEM39AQ9NV64 488 aa18.47■□□□□ 0.55
RTN3-211ENST00000542238 NYAP2Q9P242 653 aa18.47■□□□□ 0.55
RTN3-211ENST00000542238 FAM184BQ9ULE4 1060 aa18.47■□□□□ 0.55
RTN3-211ENST00000542238 MINDY4BA8MYZ0 360 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 F5H6K3 240 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 ACLYP53396 1101 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 FPGSQ05932 587 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 KLRC3Q07444 240 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 GIMAP6Q6P9H5 292 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 STK11IPQ8N1F8 1099 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 TOX2Q96NM4 488 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 STRBPQ96SI9 672 aaKnown RBP18.46■□□□□ 0.55
RTN3-211ENST00000542238 NUP88Q99567 741 aaPredicted RBP18.46■□□□□ 0.55
RTN3-211ENST00000542238 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.46■□□□□ 0.55
RTN3-211ENST00000542238 STARD7Q9NQZ5 370 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 SYNGAP1Q96PV0 1343 aa18.46■□□□□ 0.55
RTN3-211ENST00000542238 TMEM265A0A087WTH1 108 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 MOXD2PA6NHM9 499 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 ZBED4O75132 1171 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 ADAMTS4O75173 837 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 RASA1P20936 1047 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 ITGB8P26012 769 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 SLC4A3P48751 1232 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 ANKRD33Q7Z3H0 272 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 MYLIPQ8WY64 445 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 LENG1Q96BZ8 264 aaPredicted RBP18.45■□□□□ 0.54
RTN3-211ENST00000542238 TTYH1Q9H313 450 aaPredicted RBP18.45■□□□□ 0.54
RTN3-211ENST00000542238 ZNF287Q9HBT7 754 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 ECHDC1Q9NTX5 307 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 ZHX1Q9UKY1 873 aaPredicted RBP18.45■□□□□ 0.54
RTN3-211ENST00000542238 SYNRGQ9UMZ2 1314 aa18.45■□□□□ 0.54
RTN3-211ENST00000542238 GSG1L2A8MUP6 293 aa18.44■□□□□ 0.54
RTN3-211ENST00000542238 ATP2A1O14983 1001 aa18.44■□□□□ 0.54
RTN3-211ENST00000542238 NDUFB10O96000 172 aa18.44■□□□□ 0.54
RTN3-211ENST00000542238 FOSL2P15408 326 aa18.44■□□□□ 0.54
RTN3-211ENST00000542238 MAMDC4Q6UXC1 1216 aa18.44■□□□□ 0.54
RTN3-211ENST00000542238 CPXCR1Q8N123 301 aa18.44■□□□□ 0.54
RTN3-211ENST00000542238 GPATCH3Q96I76 525 aa18.44■□□□□ 0.54
RTN3-211ENST00000542238 CLIP2Q9UDT6 1046 aa18.44■□□□□ 0.54
RTN3-211ENST00000542238 MCM3APO60318 1980 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 SMARCA5O60264 1052 aaPredicted RBP18.43■□□□□ 0.54
RTN3-211ENST00000542238 DUSP11O75319 330 aaKnown RBP18.43■□□□□ 0.54
RTN3-211ENST00000542238 SNAI1O95863 264 aaPredicted RBP18.43■□□□□ 0.54
RTN3-211ENST00000542238 EPHB4P54760 987 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 FAAP100Q0VG06 881 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 KCNA10Q16322 511 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 ZNF467Q7Z7K2 595 aaPredicted RBP18.43■□□□□ 0.54
RTN3-211ENST00000542238 ZNF444Q8N0Y2 327 aaPredicted RBP18.43■□□□□ 0.54
RTN3-211ENST00000542238 KIFC2Q96AC6 838 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 GLT1D1Q96MS3 346 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 SPC25Q9HBM1 224 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 FBXO40Q9UH90 709 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 RIPK3Q9Y572 518 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 MROH7Q68CQ1 1323 aa18.43■□□□□ 0.54
RTN3-211ENST00000542238 DNAJC25-GNG10A0A024R161 153 aa18.42■□□□□ 0.54
RTN3-211ENST00000542238 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.42■□□□□ 0.54
RTN3-211ENST00000542238 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.42■□□□□ 0.54
RTN3-211ENST00000542238 GNAT2P19087 354 aa18.42■□□□□ 0.54
RTN3-211ENST00000542238 TDO2P48775 406 aa18.42■□□□□ 0.54
RTN3-211ENST00000542238 ANKRD35Q8N283 1001 aa18.42■□□□□ 0.54
RTN3-211ENST00000542238 KBTBD3Q8NAB2 608 aa18.42■□□□□ 0.54
RTN3-211ENST00000542238 PCSK9Q8NBP7 692 aaKnown RBP18.42■□□□□ 0.54
RTN3-211ENST00000542238 KLHDC9Q8NEP7 349 aa18.42■□□□□ 0.54
RTN3-211ENST00000542238 APPBP2Q92624 585 aa18.42■□□□□ 0.54
RTN3-211ENST00000542238 FEM1BQ9UK73 627 aa18.42■□□□□ 0.54
RTN3-211ENST00000542238 RNF113AO15541 343 aaKnown RBP18.41■□□□□ 0.54
RTN3-211ENST00000542238 TIMP1P01033 207 aa18.41■□□□□ 0.54
RTN3-211ENST00000542238 APPP05067 770 aa18.41■□□□□ 0.54
RTN3-211ENST00000542238 ZFYP08048 801 aaPredicted RBP18.41■□□□□ 0.54
RTN3-211ENST00000542238 C6orf222P0C671 652 aaPredicted RBP18.41■□□□□ 0.54
RTN3-211ENST00000542238 ACVR2BQ13705 512 aa18.41■□□□□ 0.54
RTN3-211ENST00000542238 CHST13Q8NET6 341 aa18.41■□□□□ 0.54
RTN3-211ENST00000542238 VTI1AQ96AJ9 217 aa18.41■□□□□ 0.54
RTN3-211ENST00000542238 ABHD16BQ9H3Z7 469 aa18.41■□□□□ 0.54
RTN3-211ENST00000542238 RAVER2Q9HCJ3 691 aaKnown RBP18.41■□□□□ 0.54
RTN3-211ENST00000542238 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.41■□□□□ 0.54
RTN3-211ENST00000542238 SYNPO2Q9UMS6 1093 aa18.41■□□□□ 0.54
RTN3-211ENST00000542238 ELP1O95163 1332 aa18.41■□□□□ 0.54
RTN3-211ENST00000542238 CST5P28325 142 aaPredicted RBP18.4■□□□□ 0.54
RTN3-211ENST00000542238 OAZ1P54368 228 aa18.4■□□□□ 0.54
RTN3-211ENST00000542238 LRRFIP1Q32MZ4 808 aaKnown RBP18.4■□□□□ 0.54
RTN3-211ENST00000542238 DIEXFQ68CQ4 756 aaKnown RBP18.4■□□□□ 0.54
RTN3-211ENST00000542238 CCSAPQ6IQ19 270 aaPredicted RBP18.4■□□□□ 0.54
RTN3-211ENST00000542238 CCDC174Q6PII3 467 aa18.4■□□□□ 0.54
RTN3-211ENST00000542238 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.4■□□□□ 0.54
RTN3-211ENST00000542238 OSBP2Q969R2 916 aa18.4■□□□□ 0.54
RTN3-211ENST00000542238 MKL1Q969V6 931 aa18.4■□□□□ 0.54
RTN3-211ENST00000542238 SLC38A10Q9HBR0 1119 aa18.4■□□□□ 0.54
RTN3-211ENST00000542238 RCAN3Q9UKA8 241 aa18.4■□□□□ 0.54
RTN3-211ENST00000542238 IGKV6D-41A0A0C4DH26 115 aa18.39■□□□□ 0.53
RTN3-211ENST00000542238 GPAA1O43292 621 aa18.39■□□□□ 0.53
RTN3-211ENST00000542238 PRDM1O75626 825 aa18.39■□□□□ 0.53
RTN3-211ENST00000542238 TTLL1O95922 423 aa18.39■□□□□ 0.53
RTN3-211ENST00000542238 CCDC144BQ3MJ40 725 aa18.39■□□□□ 0.53
RTN3-211ENST00000542238 GMCL1P1Q8NEA9 526 aa18.39■□□□□ 0.53
RTN3-211ENST00000542238 CEP95Q96GE4 821 aa18.39■□□□□ 0.53
RTN3-211ENST00000542238 MTMR4Q9NYA4 1195 aa18.39■□□□□ 0.53
RTN3-211ENST00000542238 MYADML2A6NDP7 307 aa18.38■□□□□ 0.53
RTN3-211ENST00000542238 ASGR1P07306 291 aa18.38■□□□□ 0.53
RTN3-211ENST00000542238 FDX1P10109 184 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms