RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 SLC16A2P36021 539 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 IREB2P48200 963 aaKnown RBP8.48□□□□□ -1.05
VPS53-205ENST00000541903 STAT2P52630 851 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 USP14P54578 494 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 UBE2HP62256 183 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 CEBPZQ03701 1054 aaKnown RBP8.48□□□□□ -1.05
VPS53-205ENST00000541903 STK38Q15208 465 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 ZYXQ15942 572 aaKnown RBP8.48□□□□□ -1.05
VPS53-205ENST00000541903 CDC37Q16543 378 aaPredicted RBP8.48□□□□□ -1.05
VPS53-205ENST00000541903 KLHL40Q2TBA0 621 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 RILPL1Q5EBL4 403 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 NOL9Q5SY16 702 aaKnown RBP8.48□□□□□ -1.05
VPS53-205ENST00000541903 FAM83BQ5T0W9 1011 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 SYDE2Q5VT97 1194 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 CCDC84Q86UT8 332 aaPredicted RBP8.48□□□□□ -1.05
VPS53-205ENST00000541903 FAM160B2Q86V87 743 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 BLIDQ8IZY5 108 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 DAGLBQ8NCG7 672 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 LEO1Q8WVC0 666 aaPredicted RBP8.48□□□□□ -1.05
VPS53-205ENST00000541903 LPAR1Q92633 364 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 SHISA4Q96DD7 197 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 KLRG1Q96E93 195 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 CDCA5Q96FF9 252 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 USP28Q96RU2 1077 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 GLIS2Q9BZE0 524 aaPredicted RBP8.48□□□□□ -1.05
VPS53-205ENST00000541903 KIAA1683Q9H0B3 1180 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 JMJD4Q9H9V9 463 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 POLR3EQ9NVU0 708 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 PCDHA4Q9UN74 947 aa8.48□□□□□ -1.05
VPS53-205ENST00000541903 WDR90Q96KV7 1748 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 ESYT2A0FGR8 921 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 WDR46O15213 610 aaKnown RBP8.47□□□□□ -1.05
VPS53-205ENST00000541903 YEATS4O95619 227 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 PTPRAP18433 802 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 NASPP49321 788 aaPredicted RBP8.47□□□□□ -1.05
VPS53-205ENST00000541903 ADCY7P51828 1080 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 MAP3K9P80192 1104 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 TRAF1Q13077 416 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 NR5A1Q13285 461 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 PRKG1Q13976 671 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 TTLL12Q14166 644 aaPredicted RBP8.47□□□□□ -1.05
VPS53-205ENST00000541903 SF3A1Q15459 793 aaKnown RBP8.47□□□□□ -1.05
VPS53-205ENST00000541903 ANO1Q5XXA6 986 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 BTNL9Q6UXG8 535 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 ZNF280CQ8ND82 737 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.47□□□□□ -1.05
VPS53-205ENST00000541903 BICD2Q8TD16 824 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 KCNG4Q8TDN1 519 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 OXER1Q8TDS5 423 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 CHURC1Q8WUH1 139 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 ZKSCAN4Q969J2 545 aaPredicted RBP8.47□□□□□ -1.05
VPS53-205ENST00000541903 MTMR8Q96EF0 704 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 WDR18Q9BV38 432 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 RTEL1Q9NZ71 1219 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 FEM1BQ9UK73 627 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 CLEC11AQ9Y240 323 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 CSADQ9Y600 493 aa8.47□□□□□ -1.05
VPS53-205ENST00000541903 SCN4AP35499 1836 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 CCDC194A0A1B0GVG4 234 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 SMCO2A6NFE2 343 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 PLA2G6O60733 806 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 GADD45BO75293 160 aaPredicted RBP8.46□□□□□ -1.06
VPS53-205ENST00000541903 USP2O75604 605 aaPredicted RBP8.46□□□□□ -1.06
VPS53-205ENST00000541903 BMP15O95972 392 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 VEGFAP15692 232 aaPredicted RBP8.46□□□□□ -1.06
VPS53-205ENST00000541903 ME1P48163 572 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 TRAPPC10P48553 1259 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 SPP2Q13103 211 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 MTMR2Q13614 643 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 NPY5RQ15761 445 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 QRICH1Q2TAL8 776 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 TPRNQ4KMQ1 711 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 TYW1BQ6NUM6 668 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 PIK3AP1Q6ZUJ8 805 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 ARMC9Q7Z3E5 817 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 KRT25Q7Z3Z0 450 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 REXO1Q8N1G1 1221 aaKnown RBP8.46□□□□□ -1.06
VPS53-205ENST00000541903 JMYQ8N9B5 988 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 TNFRSF25Q93038 417 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 SYAP1Q96A49 352 aaPredicted RBP8.46□□□□□ -1.06
VPS53-205ENST00000541903 AMNQ9BXJ7 453 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 FTOQ9C0B1 505 aaKnown RBP eCLIP8.46□□□□□ -1.06
VPS53-205ENST00000541903 ZMYND12Q9H0C1 365 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 GLT8D2Q9H1C3 349 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 TMOD4Q9NZQ9 345 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 RCOR1Q9UKL0 485 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 PRR12Q9ULL5 1215 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 FZD1Q9UP38 647 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 CEP131Q9UPN4 1083 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 ZHX2Q9Y6X8 837 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 DOCK1Q14185 1865 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 MYH4Q9Y623 1939 aa8.46□□□□□ -1.06
VPS53-205ENST00000541903 TRIM75PA6NK02 468 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 POTECB2RU33 542 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 C19orf81C9J6K1 198 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 SPTLC2O15270 562 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 PPP1R11O60927 126 aaPredicted RBP8.45□□□□□ -1.06
VPS53-205ENST00000541903 VCAM1P19320 739 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 ATP2B1P20020 1258 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 MRPL12P52815 198 aaKnown RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms