RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 BMP6P22004 513 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 CCDC96Q2M329 555 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 CCDC93Q567U6 631 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 CCDC148Q8NFR7 591 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 LZTS2Q9BRK4 669 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 SCAF8Q9UPN6 1271 aaKnown RBP16.56■□□□□ 0.24
CLIP1-216ENST00000541410 CERKLQ49MI3 558 aaPredicted RBP16.56■□□□□ 0.24
CLIP1-216ENST00000541410 SUPT20HQ8NEM7 779 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 TRIM34Q9BYJ4 488 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 KCNF1Q9H3M0 494 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 TMEM260Q9NX78 707 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 PI4KBQ9UBF8 816 aa16.56■□□□□ 0.24
CLIP1-216ENST00000541410 BIN2Q9UBW5 565 aaPredicted RBP16.56■□□□□ 0.24
CLIP1-216ENST00000541410 SEPT2Q15019 361 aa16.55■□□□□ 0.24
CLIP1-216ENST00000541410 HSP90AA4PQ58FG1 418 aa16.55■□□□□ 0.24
CLIP1-216ENST00000541410 JAKMIP3Q5VZ66 844 aa16.55■□□□□ 0.24
CLIP1-216ENST00000541410 CCDC186Q7Z3E2 898 aa16.55■□□□□ 0.24
CLIP1-216ENST00000541410 IDI2Q9BXS1 227 aa16.55■□□□□ 0.24
CLIP1-216ENST00000541410 TMEM60Q9H2L4 133 aa16.55■□□□□ 0.24
CLIP1-216ENST00000541410 EEF2P13639 858 aaKnown RBP16.55■□□□□ 0.24
CLIP1-216ENST00000541410 LMOD1P29536 600 aaPredicted RBP16.55■□□□□ 0.24
CLIP1-216ENST00000541410 FKBP1AP62942 108 aaKnown RBP16.55■□□□□ 0.24
CLIP1-216ENST00000541410 CC2D2BQ6DHV5 1058 aa16.55■□□□□ 0.24
CLIP1-216ENST00000541410 FERMT2Q96AC1 680 aa16.55■□□□□ 0.24
CLIP1-216ENST00000541410 SRCAPQ6ZRS2 3230 aa16.54■□□□□ 0.24
CLIP1-216ENST00000541410 JAG1P78504 1218 aa16.54■□□□□ 0.24
CLIP1-216ENST00000541410 ADGRF4Q8IZF3 695 aa16.54■□□□□ 0.24
CLIP1-216ENST00000541410 ZMYND12Q9H0C1 365 aa16.54■□□□□ 0.24
CLIP1-216ENST00000541410 RIOX1Q9H6W3 641 aa16.54■□□□□ 0.24
CLIP1-216ENST00000541410 PP2D1A8MPX8 630 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 HDLBPQ00341 1268 aaKnown RBP16.53■□□□□ 0.24
CLIP1-216ENST00000541410 ZNF543Q08ER8 600 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 LETM2Q2VYF4 491 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 CCDC144BQ3MJ40 725 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 MRIQ9BWK5 157 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 DHX36Q9H2U1 1008 aaKnown RBP16.53■□□□□ 0.24
CLIP1-216ENST00000541410 MAN1B1Q9UKM7 699 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 USP17L10C9JJH3 530 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 TRAPPC10P48553 1259 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 LRMPQ12912 555 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 RRP1BQ14684 758 aaKnown RBP16.53■□□□□ 0.24
CLIP1-216ENST00000541410 NCAPHQ15003 741 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 ASPRV1Q53RT3 343 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 SOGA3Q5TF21 947 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 RTKN2Q8IZC4 609 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 C4orf32Q8N8J7 132 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 CSRNP1Q96S65 589 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 PLIN2Q99541 437 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 EHD4Q9H223 541 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 JMJD4Q9H9V9 463 aa16.53■□□□□ 0.24
CLIP1-216ENST00000541410 PPP1R11O60927 126 aaPredicted RBP16.52■□□□□ 0.24
CLIP1-216ENST00000541410 BMP15O95972 392 aa16.52■□□□□ 0.24
CLIP1-216ENST00000541410 SNHG28P0DPA3 235 aa16.52■□□□□ 0.24
CLIP1-216ENST00000541410 ATP1A3P13637 1013 aa16.52■□□□□ 0.24
CLIP1-216ENST00000541410 SNAP25P60880 206 aa16.52■□□□□ 0.24
CLIP1-216ENST00000541410 ARID5BQ14865 1188 aa16.52■□□□□ 0.24
CLIP1-216ENST00000541410 RSBN1LQ6PCB5 846 aaPredicted RBP16.52■□□□□ 0.24
CLIP1-216ENST00000541410 CDAN1Q8IWY9 1227 aa16.52■□□□□ 0.24
CLIP1-216ENST00000541410 NUP88Q99567 741 aaPredicted RBP16.52■□□□□ 0.24
CLIP1-216ENST00000541410 C6orf50Q9HD87 102 aa16.52■□□□□ 0.24
CLIP1-216ENST00000541410 GREB1LQ9C091 1923 aaPredicted RBP16.52■□□□□ 0.24
CLIP1-216ENST00000541410 CCNT1O60563 726 aaKnown RBP16.52■□□□□ 0.23
CLIP1-216ENST00000541410 PTPN21Q16825 1174 aa16.52■□□□□ 0.23
CLIP1-216ENST00000541410 DAGLBQ8NCG7 672 aa16.52■□□□□ 0.23
CLIP1-216ENST00000541410 SMARCE1Q969G3 411 aa16.52■□□□□ 0.23
CLIP1-216ENST00000541410 BLZF1Q9H2G9 400 aa16.52■□□□□ 0.23
CLIP1-216ENST00000541410 PYCARDQ9ULZ3 195 aa16.52■□□□□ 0.23
CLIP1-216ENST00000541410 SHTN1A0MZ66 631 aa16.51■□□□□ 0.23
CLIP1-216ENST00000541410 SIAH1Q8IUQ4 282 aa16.51■□□□□ 0.23
CLIP1-216ENST00000541410 VEZTQ9HBM0 779 aa16.51■□□□□ 0.23
CLIP1-216ENST00000541410 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.51■□□□□ 0.23
CLIP1-216ENST00000541410 SMC2O95347 1197 aa16.51■□□□□ 0.23
CLIP1-216ENST00000541410 KARSQ15046 597 aaKnown RBP16.51■□□□□ 0.23
CLIP1-216ENST00000541410 FILIP1Q7Z7B0 1213 aa16.51■□□□□ 0.23
CLIP1-216ENST00000541410 TRMT44Q8IYL2 757 aaKnown RBP16.51■□□□□ 0.23
CLIP1-216ENST00000541410 FBXO41Q8TF61 875 aa16.51■□□□□ 0.23
CLIP1-216ENST00000541410 PAGE5Q96GU1 130 aa16.51■□□□□ 0.23
CLIP1-216ENST00000541410 CCDC17Q96LX7 622 aa16.51■□□□□ 0.23
CLIP1-216ENST00000541410 HSD3B7Q9H2F3 369 aa16.51■□□□□ 0.23
CLIP1-216ENST00000541410 HOOK1Q9UJC3 728 aaKnown RBP16.51■□□□□ 0.23
CLIP1-216ENST00000541410 SPDYE2BA6NHP3 402 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 GOLGA6L6A8MZA4 724 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 ZNF500O60304 480 aaPredicted RBP16.5■□□□□ 0.23
CLIP1-216ENST00000541410 GH2P01242 217 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 SPDYE6P0CI01 402 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 ICA1Q05084 483 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 UBE2SQ16763 222 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 SARM1Q6SZW1 724 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 SMYD4Q8IYR2 804 aaPredicted RBP16.5■□□□□ 0.23
CLIP1-216ENST00000541410 TBCKQ8TEA7 893 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 CCDC12Q8WUD4 166 aaPredicted RBP16.5■□□□□ 0.23
CLIP1-216ENST00000541410 PSMD1Q99460 953 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 IFNKQ9P0W0 207 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 MYO3BQ8WXR4 1341 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 SLFN14P0C7P3 912 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 GNA11P29992 359 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 SLC1A4P43007 532 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 NONOQ15233 471 aaKnown RBP eCLIP16.5■□□□□ 0.23
CLIP1-216ENST00000541410 DLGAP5Q15398 846 aa16.5■□□□□ 0.23
CLIP1-216ENST00000541410 ABCB5Q2M3G0 1257 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms