RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 BRAPQ7Z569 592 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 CCDC125Q86Z20 511 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 EZH1Q92800 747 aaPredicted RBP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 EPN3Q9H201 632 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 ALDH8A1Q9H2A2 487 aaPredicted RBP10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 RIPOR2Q9Y4F9 1068 aa10.61□□□□□ -0.71
CTNNA1-243ENST00000540387 A0A1W2PQ27 194 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 A0A1W2PQ64 194 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 A0A1W2PQD8 194 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 AHCYL1O43865 530 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 AMPD2Q01433 879 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 ATL3Q6DD88 541 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 ZNF594Q96JF6 807 aaPredicted RBP10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 SPAG5Q96R06 1193 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 STK32BQ9NY57 414 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 G3BP2Q9UN86 482 aaKnown RBP10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 OPLAHO14841 1288 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 TM4SF1P30408 202 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 LSP1P33241 339 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 CTSWP56202 376 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 LAMB3Q13751 1172 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 SLC30A9Q6PML9 568 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 C6orf89Q6UWU4 347 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 TPTE2Q6XPS3 522 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 FLAD1Q8NFF5 587 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 GREM2Q9H772 168 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 COPRSQ9NQ92 184 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 GGA2Q9UJY4 613 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 PCDHGC5Q9Y5F6 944 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 UBR3Q6ZT12 1888 aa10.6□□□□□ -0.71
CTNNA1-243ENST00000540387 TARSL2A2RTX5 802 aaKnown RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 PYGBP11216 843 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 MAGEA8P43361 318 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 ATP1A2P50993 1020 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 HDLBPQ00341 1268 aaKnown RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 IFFO1Q0D2I5 559 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 MYO1EQ12965 1108 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 CCDC57Q2TAC2 916 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 HSP90AA4PQ58FG1 418 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 TTMPQ5BVD1 217 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 CWF19L1Q69YN2 538 aaKnown RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 NAA16Q6N069 864 aaPredicted RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 CCNI2Q6ZMN8 369 aaPredicted RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 CCDC121Q6ZUS5 278 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 ARL8AQ96BM9 186 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 TBC1D31Q96DN5 1066 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 STAMBPL1Q96FJ0 436 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 PDGFDQ9GZP0 370 aaPredicted RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 SUDS3Q9H7L9 328 aaPredicted RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 TAF6LQ9Y6J9 622 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 ERICH2A1L162 156 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 DNM1LO00429 736 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 MYO1BO43795 1136 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 OPA1O60313 960 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 ECEL1O95672 775 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 ABL1P00519 1130 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 G3BP1Q13283 466 aaKnown RBP eCLIP10.59□□□□□ -0.717e-8■■■□□ 15.8
CTNNA1-243ENST00000540387 PDIA5Q14554 519 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 SPRED3Q2MJR0 410 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 HHATQ5VTY9 493 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 C3orf67Q6ZVT6 689 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 NCAPG2Q86XI2 1143 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 MFN1Q8IWA4 741 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 B4GALNT2Q8NHY0 566 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 RHPN1Q8TCX5 695 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 NUP133Q8WUM0 1156 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 CCDC47Q96A33 483 aaKnown RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 NUP58Q9BVL2 599 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 NYXQ9GZU5 481 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 EBF2Q9HAK2 575 aa10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 CORO1CQ9ULV4 474 aaPredicted RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.59□□□□□ -0.71
CTNNA1-243ENST00000540387 MGRN1O60291 552 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 BUB1BO60566 1050 aaPredicted RBP10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 SASH1O94885 1247 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 ITGA6P23229 1130 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 CDC25CP30307 473 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 IFIT5Q13325 482 aaKnown RBP10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 MSL1Q68DK7 614 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 SPATA21Q7Z572 469 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 TRIM58Q8NG06 486 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 UPF1Q92900 1129 aaKnown RBP eCLIP10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 MAP4K1Q92918 833 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 CCT8L2Q96SF2 557 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 OSBPL9Q96SU4 736 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 SPDYE3A6NKU9 549 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 SERPINB2P05120 415 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 EPB41P11171 864 aaKnown RBP10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 RANBP1P43487 201 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 HSP90AB4PQ58FF6 505 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 SLC10A5Q5PT55 438 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 RASGRP2Q7LDG7 609 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 NLGN1Q8N2Q7 840 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 MYCBPAPQ8TBZ2 947 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 PANX2Q96RD6 677 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 PUS3Q9BZE2 481 aaKnown RBP10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 POLD4Q9HCU8 107 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 ZNF232Q9UNY5 417 aa10.58□□□□□ -0.72
CTNNA1-243ENST00000540387 ANKRD36CQ5JPF3 1778 aa10.57□□□□□ -0.72
CTNNA1-243ENST00000540387 BCORQ6W2J9 1755 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms