RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ECHDC1Q9NTX5 307 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 CNPY2Q9Y2B0 182 aa16.26■□□□□ 0.19
SS18-204ENST00000539244 MYH4Q9Y623 1939 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 VCANP13611 3396 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 IGKV6D-41A0A0C4DH26 115 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 F5H6K3 240 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 SNAI1O95863 264 aaPredicted RBP16.25■□□□□ 0.19
SS18-204ENST00000539244 NDUFB10O96000 172 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 KLRC3Q07444 240 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 DIEXFQ68CQ4 756 aaKnown RBP16.25■□□□□ 0.19
SS18-204ENST00000539244 ANKRD33Q7Z3H0 272 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 ZNF467Q7Z7K2 595 aaPredicted RBP16.25■□□□□ 0.19
SS18-204ENST00000539244 PRPF38AQ8NAV1 312 aaKnown RBP16.25■□□□□ 0.19
SS18-204ENST00000539244 APPBP2Q92624 585 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 TOX2Q96NM4 488 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 CDX2Q99626 313 aaPredicted RBP16.25■□□□□ 0.19
SS18-204ENST00000539244 COL25A1Q9BXS0 654 aaPredicted RBP16.25■□□□□ 0.19
SS18-204ENST00000539244 SYNPO2Q9UMS6 1093 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 RIPK3Q9Y572 518 aa16.25■□□□□ 0.19
SS18-204ENST00000539244 TMEM265A0A087WTH1 108 aa16.24■□□□□ 0.19
SS18-204ENST00000539244 RAD21O60216 631 aa16.24■□□□□ 0.19
SS18-204ENST00000539244 SMARCA5O60264 1052 aaPredicted RBP16.24■□□□□ 0.19
SS18-204ENST00000539244 SNRNP48Q6IEG0 339 aaKnown RBP16.24■□□□□ 0.19
SS18-204ENST00000539244 CCSAPQ6IQ19 270 aaPredicted RBP16.24■□□□□ 0.19
SS18-204ENST00000539244 KLHDC9Q8NEP7 349 aa16.24■□□□□ 0.19
SS18-204ENST00000539244 OSBP2Q969R2 916 aa16.24■□□□□ 0.19
SS18-204ENST00000539244 MKL1Q969V6 931 aa16.24■□□□□ 0.19
SS18-204ENST00000539244 NUP88Q99567 741 aaPredicted RBP16.24■□□□□ 0.19
SS18-204ENST00000539244 MKNK2Q9HBH9 465 aa16.24■□□□□ 0.19
SS18-204ENST00000539244 RCAN3Q9UKA8 241 aa16.24■□□□□ 0.19
SS18-204ENST00000539244 SYNRGQ9UMZ2 1314 aa16.23■□□□□ 0.19
SS18-204ENST00000539244 PRUNE2Q8WUY3 3088 aa16.23■□□□□ 0.19
SS18-204ENST00000539244 MOXD2PA6NHM9 499 aa16.23■□□□□ 0.19
SS18-204ENST00000539244 CST5P28325 142 aaPredicted RBP16.23■□□□□ 0.19
SS18-204ENST00000539244 ACLYP53396 1101 aa16.23■□□□□ 0.19
SS18-204ENST00000539244 NUP133Q8WUM0 1156 aa16.23■□□□□ 0.19
SS18-204ENST00000539244 LENG1Q96BZ8 264 aaPredicted RBP16.23■□□□□ 0.19
SS18-204ENST00000539244 TTYH1Q9H313 450 aaPredicted RBP16.23■□□□□ 0.19
SS18-204ENST00000539244 EPB41L4AQ9HCS5 686 aaPredicted RBP16.23■□□□□ 0.19
SS18-204ENST00000539244 FAM184BQ9ULE4 1060 aa16.23■□□□□ 0.19
SS18-204ENST00000539244 PQBP1O60828 265 aaKnown RBP16.22■□□□□ 0.19
SS18-204ENST00000539244 DUSP11O75319 330 aaKnown RBP16.22■□□□□ 0.19
SS18-204ENST00000539244 ZFYP08048 801 aaPredicted RBP16.22■□□□□ 0.19
SS18-204ENST00000539244 RAG1P15918 1043 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 GNAT2P19087 354 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 EPHB4P54760 987 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 FAAP100Q0VG06 881 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 DDX11Q96FC9 970 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 SLC38A10Q9HBR0 1119 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 ZNF287Q9HBT7 754 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 STARD7Q9NQZ5 370 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 CLIP2Q9UDT6 1046 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 PLIN4Q96Q06 1357 aa16.22■□□□□ 0.19
SS18-204ENST00000539244 MCM3APO60318 1980 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 MINDY4BA8MYZ0 360 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 RNF113AO15541 343 aaKnown RBP16.21■□□□□ 0.19
SS18-204ENST00000539244 GPAA1O43292 621 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 ZBED4O75132 1171 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 OAZ1P54368 228 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 C20orf194Q5TEA3 1177 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 GMCL1P1Q8NEA9 526 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 GPATCH3Q96I76 525 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 RNPC3Q96LT9 517 aaKnown RBP16.21■□□□□ 0.19
SS18-204ENST00000539244 FGD4Q96M96 766 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 DCTPP1Q9H773 170 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 TMEM39AQ9NV64 488 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 MTMR4Q9NYA4 1195 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 FBXO40Q9UH90 709 aa16.21■□□□□ 0.19
SS18-204ENST00000539244 ELP1O95163 1332 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 DCDC2CA8MYV0 355 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 FPGSQ05932 587 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 ACVR2BQ13705 512 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 KCNA10Q16322 511 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 ZNF444Q8N0Y2 327 aaPredicted RBP16.2■□□□□ 0.18
SS18-204ENST00000539244 CPXCR1Q8N123 301 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 CHST13Q8NET6 341 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 MAFAQ8NHW3 353 aaPredicted RBP16.2■□□□□ 0.18
SS18-204ENST00000539244 CEP95Q96GE4 821 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 UPF3AQ9H1J1 476 aaKnown RBP16.2■□□□□ 0.18
SS18-204ENST00000539244 ABHD16BQ9H3Z7 469 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 FEM1BQ9UK73 627 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 ZHX1Q9UKY1 873 aaPredicted RBP16.2■□□□□ 0.18
SS18-204ENST00000539244 TBX21Q9UL17 535 aa16.2■□□□□ 0.18
SS18-204ENST00000539244 MROH7Q68CQ1 1323 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 MYADML2A6NDP7 307 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 ADCY6O43306 1168 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 TTLL1O95922 423 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 FDX1P10109 184 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 TDO2P48775 406 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 CDK7P50613 346 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 GJA9P57773 515 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 NKX3-2P78367 333 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 STK11IPQ8N1F8 1099 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 PCSK9Q8NBP7 692 aaKnown RBP16.19■□□□□ 0.18
SS18-204ENST00000539244 MYLIPQ8WY64 445 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 KIFC2Q96AC6 838 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 GLT1D1Q96MS3 346 aa16.19■□□□□ 0.18
SS18-204ENST00000539244 RAVER2Q9HCJ3 691 aaKnown RBP16.19■□□□□ 0.18
SS18-204ENST00000539244 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.19■□□□□ 0.18
SS18-204ENST00000539244 PATL2C9JE40 543 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms