RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 HIPK3Q9H422 1215 aa14.64□□□□□ -0.07
YBX3-207ENST00000539204 ARHGEF10LQ9HCE6 1279 aa14.64□□□□□ -0.07
YBX3-207ENST00000539204 ADAMTS5Q9UNA0 930 aa14.64□□□□□ -0.07
YBX3-207ENST00000539204 CDK5RAP2Q96SN8 1893 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 ZBBXA8MT70 800 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 PRR33A8MZF0 331 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 E9PSI1 815 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 ATP2A2P16615 1042 aaKnown RBP14.63□□□□□ -0.07
YBX3-207ENST00000539204 COPB2P35606 906 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 GJA9P57773 515 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 IRX5P78411 483 aaPredicted RBP14.63□□□□□ -0.07
YBX3-207ENST00000539204 GABPAQ06546 454 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 TMEM67Q5HYA8 995 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 MAMDC4Q6UXC1 1216 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 TMEM179Q6ZVK1 233 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 MAGEB6Q8N7X4 407 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 DDX11Q96FC9 970 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 DBNDD2Q9BQY9 259 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 SH2D4AQ9H788 454 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 VCPKMTQ9H867 229 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 GPR108Q9NPR9 543 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 TMX2Q9Y320 296 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 PRRC2BQ5JSZ5 2229 aaKnown RBP14.63□□□□□ -0.07
YBX3-207ENST00000539204 FOCADQ5VW36 1801 aa14.63□□□□□ -0.07
YBX3-207ENST00000539204 MYH1P12882 1939 aa14.62□□□□□ -0.07
YBX3-207ENST00000539204 WDR46O15213 610 aaKnown RBP14.62□□□□□ -0.07
YBX3-207ENST00000539204 CCL23P55773 120 aa14.62□□□□□ -0.07
YBX3-207ENST00000539204 ACVR2BQ13705 512 aa14.62□□□□□ -0.07
YBX3-207ENST00000539204 TNNI3KQ59H18 835 aa14.62□□□□□ -0.07
YBX3-207ENST00000539204 FAM9BQ8IZU0 186 aa14.62□□□□□ -0.07
YBX3-207ENST00000539204 CERS4Q9HA82 394 aa14.62□□□□□ -0.07
YBX3-207ENST00000539204 FPGT-TNNI3KV9GXZ4 949 aa14.62□□□□□ -0.07
YBX3-207ENST00000539204 VWA5AO00534 786 aa14.61□□□□□ -0.07
YBX3-207ENST00000539204 SIAH1Q8IUQ4 282 aa14.61□□□□□ -0.07
YBX3-207ENST00000539204 UPF3AQ9H1J1 476 aaKnown RBP14.61□□□□□ -0.07
YBX3-207ENST00000539204 ABHD16BQ9H3Z7 469 aa14.61□□□□□ -0.07
YBX3-207ENST00000539204 MCM9Q9NXL9 1143 aa14.61□□□□□ -0.07
YBX3-207ENST00000539204 TRANK1O15050 2925 aa14.61□□□□□ -0.07
YBX3-207ENST00000539204 CA3P07451 260 aa14.6□□□□□ -0.07
YBX3-207ENST00000539204 CCDC144BQ3MJ40 725 aa14.6□□□□□ -0.07
YBX3-207ENST00000539204 KRT40Q6A162 431 aa14.6□□□□□ -0.07
YBX3-207ENST00000539204 TMED8Q6PL24 325 aaPredicted RBP14.6□□□□□ -0.07
YBX3-207ENST00000539204 SLC43A3Q8NBI5 491 aa14.6□□□□□ -0.07
YBX3-207ENST00000539204 UIMC1Q96RL1 719 aa14.6□□□□□ -0.07
YBX3-207ENST00000539204 FBXO28Q9NVF7 368 aa14.6□□□□□ -0.07
YBX3-207ENST00000539204 UMODL1Q5DID0 1318 aa14.6□□□□□ -0.07
YBX3-207ENST00000539204 PNMA6EA0A0J9YXQ4 647 aa14.59□□□□□ -0.07
YBX3-207ENST00000539204 CABYRO75952 493 aa14.59□□□□□ -0.07
YBX3-207ENST00000539204 GNAI2P04899 355 aa14.59□□□□□ -0.07
YBX3-207ENST00000539204 ICA1Q05084 483 aa14.59□□□□□ -0.07
YBX3-207ENST00000539204 ZNF467Q7Z7K2 595 aaPredicted RBP14.59□□□□□ -0.07
YBX3-207ENST00000539204 ARNTL2Q8WYA1 636 aa14.59□□□□□ -0.07
YBX3-207ENST00000539204 SEZ6LQ9BYH1 1024 aa14.59□□□□□ -0.07
YBX3-207ENST00000539204 CD320Q9NPF0 282 aa14.59□□□□□ -0.07
YBX3-207ENST00000539204 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.59□□□□□ -0.07
YBX3-207ENST00000539204 SWAP70Q9UH65 585 aa14.59□□□□□ -0.07
YBX3-207ENST00000539204 ZNF214Q9UL59 606 aaPredicted RBP14.59□□□□□ -0.07
YBX3-207ENST00000539204 PPP1R9AQ9ULJ8 1098 aa14.59□□□□□ -0.07
YBX3-207ENST00000539204 A0A0G2JMZ2 1700 aa14.58□□□□□ -0.07
YBX3-207ENST00000539204 SLFN5Q08AF3 891 aa14.58□□□□□ -0.08
YBX3-207ENST00000539204 OS9Q13438 667 aaPredicted RBP14.58□□□□□ -0.08
YBX3-207ENST00000539204 ITGA7Q13683 1181 aa14.58□□□□□ -0.08
YBX3-207ENST00000539204 CXCL17Q6UXB2 119 aa14.58□□□□□ -0.08
YBX3-207ENST00000539204 RIOK1Q9BRS2 568 aaKnown RBP14.58□□□□□ -0.08
YBX3-207ENST00000539204 NOC4LQ9BVI4 516 aaKnown RBP14.58□□□□□ -0.08
YBX3-207ENST00000539204 GBF1Q92538 1859 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 DNAJC25-GNG10A0A024R161 153 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 MAGEB6P1A0A0J9YX57 407 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 EPOPA6NHQ4 379 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 KIF28PB7ZC32 967 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 CTAGE5O15320 804 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 ADCY6O43306 1168 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 ALADP13716 330 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 NKX3-2P78367 333 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 BEX3Q00994 111 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 EVX2Q03828 476 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 CSPP1Q1MSJ5 1256 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 NOL8Q76FK4 1167 aaKnown RBP14.57□□□□□ -0.08
YBX3-207ENST00000539204 CLEC10AQ8IUN9 316 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 GJD3Q8N144 294 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 REPS2Q8NFH8 660 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 SCLYQ96I15 445 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 TEX13BQ9BXU2 312 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 CRNKL1Q9BZJ0 848 aaKnown RBP14.57□□□□□ -0.08
YBX3-207ENST00000539204 TRPV6Q9H1D0 765 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 WNT8AQ9H1J5 351 aa14.57□□□□□ -0.08
YBX3-207ENST00000539204 RAD21O60216 631 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 PFKMP08237 780 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 ACTN1P12814 892 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 AKR1B1P15121 316 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 SLC4A3P48751 1232 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 NHLH1Q02575 133 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 TTLL4Q14679 1199 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 SNRNP48Q6IEG0 339 aaKnown RBP14.56□□□□□ -0.08
YBX3-207ENST00000539204 PHOSPHO2Q8TCD6 241 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 CCDC17Q96LX7 622 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 GOPCQ9HD26 462 aa14.56□□□□□ -0.08
YBX3-207ENST00000539204 ZEB2O60315 1214 aa14.55□□□□□ -0.08
YBX3-207ENST00000539204 B4GALT4O60513 344 aa14.55□□□□□ -0.08
YBX3-207ENST00000539204 EEF2P13639 858 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms