RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 LBHD1Q9BQE6 289 aaPredicted RBP4.19□□□□□ -1.74
MCF2-210ENST00000536274 TRIM4Q9C037 500 aa4.19□□□□□ -1.74
MCF2-210ENST00000536274 HSD3B7Q9H2F3 369 aa4.19□□□□□ -1.74
MCF2-210ENST00000536274 SUDS3Q9H7L9 328 aaPredicted RBP4.19□□□□□ -1.74
MCF2-210ENST00000536274 PAPOLBQ9NRJ5 636 aaKnown RBP4.19□□□□□ -1.74
MCF2-210ENST00000536274 INTS13Q9NVM9 706 aa4.19□□□□□ -1.74
MCF2-210ENST00000536274 RHBDL2Q9NX52 303 aa4.19□□□□□ -1.74
MCF2-210ENST00000536274 RAB21Q9UL25 225 aa4.19□□□□□ -1.74
MCF2-210ENST00000536274 PNMA6EA0A0J9YXQ4 647 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 ZNF185O15231 689 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 CDKL5O76039 1030 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 PDHA1P08559 390 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 CLTAP09496 248 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 NAT1P18440 290 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 ME1P48163 572 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 PAPOLAP51003 745 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 SMTNP53814 917 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 POLE2P56282 527 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 CCDC15Q0P6D6 951 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 SAFB2Q14151 953 aaKnown RBP eCLIP4.18□□□□□ -1.74
MCF2-210ENST00000536274 QPCTQ16769 361 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 TXNRD1Q16881 649 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 CCDC178Q5BJE1 867 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 CWF19L1Q69YN2 538 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 OTUD7BQ6GQQ9 843 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 RINLQ6ZS11 566 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 TMEM110Q86TL2 294 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 PNMA8AQ86V59 439 aaPredicted RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 MSANTD4Q8NCY6 345 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 ANKK1Q8NFD2 765 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 HDAC7Q8WUI4 952 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 HNRNPLLQ8WVV9 542 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 PHACTR3Q96KR7 559 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 RNPC3Q96LT9 517 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 OSBPL7Q9BZF2 842 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 PCMTD2Q9NV79 361 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 DNAAF2Q9NVR5 837 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 SMARCAL1Q9NZC9 954 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 DICER1Q9UPY3 1922 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 DPPA5A6NC42 116 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 HGSO14964 777 aaPredicted RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 CCP110O43303 1012 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 TOP1P11387 765 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 MATR3P43243 847 aaKnown RBP eCLIP4.18□□□□□ -1.74
MCF2-210ENST00000536274 CTCFP49711 727 aaPredicted RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 NDUFA8P51970 172 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 EVA1CP58658 441 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 MPP3Q13368 585 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 HIBCHQ6NVY1 386 aaPredicted RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 RAD9BQ6WBX8 426 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 TSEN2Q8NCE0 465 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 ZNF473Q8WTR7 871 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 BRF1Q92994 677 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 RSRC1Q96IZ7 334 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 SPAG5Q96R06 1193 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 MMS19Q96T76 1030 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 SELENOOQ9BVL4 669 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.18□□□□□ -1.74
MCF2-210ENST00000536274 ATP6V0A4Q9HBG4 840 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 NOD2Q9HC29 1040 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 ANO10Q9NW15 660 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 ABCF2Q9UG63 623 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 KDM6AO15550 1401 aaPredicted RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 ATP10DQ9P241 1426 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 E7EVH7 732 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 PFKFB2O60825 505 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 HPDP32754 393 aaPredicted RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 MECOMQ03112 1051 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 ICA1Q05084 483 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 PPARAQ07869 468 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 MAP3K12Q12852 859 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 PPFIA1Q13136 1202 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 AMHR2Q16671 573 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 TWISTNBQ3B726 338 aaPredicted RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 CCDC102BQ68D86 513 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 FAM47EQ6ZV65 393 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 SND1Q7KZF4 910 aaKnown RBP eCLIP4.18□□□□□ -1.74
MCF2-210ENST00000536274 HOOK3Q86VS8 718 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 TRMT44Q8IYL2 757 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 RBM17Q96I25 401 aaKnown RBP4.18□□□□□ -1.74
MCF2-210ENST00000536274 STK31Q9BXU1 1019 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 MBIPQ9NS73 344 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 GJB4Q9NTQ9 266 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 AATFQ9NY61 560 aaKnown RBP eCLIP4.18□□□□□ -1.74
MCF2-210ENST00000536274 IMPACTQ9P2X3 320 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 CDC23Q9UJX2 597 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 VPS9D1Q9Y2B5 631 aa4.18□□□□□ -1.74
MCF2-210ENST00000536274 ABCC4O15439 1325 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 GOLGA6L7A0A1B0GV03 622 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 CTAGE15A4D2H0 777 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 GOLGA6BA6NDN3 693 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 ZSCAN12O43309 604 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 GIGYF1O75420 1035 aaPredicted RBP4.17□□□□□ -1.74
MCF2-210ENST00000536274 CTAGE8P0CG41 777 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 ATP4AP20648 1035 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 PPP1R7Q15435 360 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 PDCD2Q16342 344 aaPredicted RBP4.17□□□□□ -1.74
MCF2-210ENST00000536274 RNF220Q5VTB9 566 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 ARHGAP22Q7Z5H3 698 aa4.17□□□□□ -1.74
MCF2-210ENST00000536274 CTAGE6Q86UF2 777 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms