RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 BMP6P22004 513 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 APOBRQ0VD83 1088 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 COL9A3Q14050 684 aaPredicted RBP7.88□□□□□ -1.15
USP28-202ENST00000535607 ALDH1L2Q3SY69 923 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 NUTM2GQ5VZR2 741 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 MCTP1Q6DN14 999 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 IGF2-ASQ6U949 168 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 CCDC84Q86UT8 332 aaPredicted RBP7.88□□□□□ -1.15
USP28-202ENST00000535607 NGDNQ8NEJ9 315 aaKnown RBP7.88□□□□□ -1.15
USP28-202ENST00000535607 MYRIPQ8NFW9 859 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 ZNF296Q8WUU4 475 aaPredicted RBP7.88□□□□□ -1.15
USP28-202ENST00000535607 ELMO3Q96BJ8 720 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 CYP4F12Q9HCS2 524 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 PCDHA4Q9UN74 947 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 ROBO1Q9Y6N7 1651 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 PHRF1Q9P1Y6 1649 aaKnown RBP7.88□□□□□ -1.15
USP28-202ENST00000535607 ABCC6O95255 1503 aa7.88□□□□□ -1.15
USP28-202ENST00000535607 TNS3Q68CZ2 1445 aa7.87□□□□□ -1.15
USP28-202ENST00000535607 DDX3YO15523 660 aaKnown RBP7.87□□□□□ -1.15
USP28-202ENST00000535607 DEAF1O75398 565 aaPredicted RBP7.87□□□□□ -1.15
USP28-202ENST00000535607 TFE3P19532 575 aaPredicted RBP7.87□□□□□ -1.15
USP28-202ENST00000535607 RACK1P63244 317 aaKnown RBP7.87□□□□□ -1.15
USP28-202ENST00000535607 RAD51AP2Q09MP3 1159 aa7.87□□□□□ -1.15
USP28-202ENST00000535607 SEPT6Q14141 434 aa7.87□□□□□ -1.15
USP28-202ENST00000535607 CWF19L2Q2TBE0 894 aaKnown RBP7.87□□□□□ -1.15
USP28-202ENST00000535607 FOXD4L6Q3SYB3 417 aaPredicted RBP7.87□□□□□ -1.15
USP28-202ENST00000535607 CAVIN1Q6NZI2 390 aaKnown RBP7.87□□□□□ -1.15
USP28-202ENST00000535607 FDX2Q6P4F2 183 aa7.87□□□□□ -1.15
USP28-202ENST00000535607 FOXD4L3Q6VB84 417 aaPredicted RBP7.87□□□□□ -1.15
USP28-202ENST00000535607 ALYREFQ86V81 257 aaKnown RBP7.87□□□□□ -1.15
USP28-202ENST00000535607 PDCL2Q8N4E4 241 aa7.87□□□□□ -1.15
USP28-202ENST00000535607 GRIN3AQ8TCU5 1115 aa7.87□□□□□ -1.15
USP28-202ENST00000535607 GPRASP2Q96D09 838 aa7.87□□□□□ -1.15
USP28-202ENST00000535607 RNF208Q9H0X6 261 aa7.87□□□□□ -1.15
USP28-202ENST00000535607 SLIT3O75094 1523 aa7.87□□□□□ -1.15
USP28-202ENST00000535607 MARF1Q9Y4F3 1742 aaKnown RBP7.86□□□□□ -1.15
USP28-202ENST00000535607 ARHGEF10O15013 1369 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 AATKQ6ZMQ8 1374 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 TTC21BQ7Z4L5 1316 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 LOC100289279A0A1B0GTE1 492 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 GOLGA6L6A8MZA4 724 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 DLL1O00548 723 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 REC8O95072 547 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 HOXB4P17483 251 aaPredicted RBP7.86□□□□□ -1.15
USP28-202ENST00000535607 GTF2F1P35269 517 aaKnown RBP eCLIP7.86□□□□□ -1.15
USP28-202ENST00000535607 NRG1Q02297 640 aaPredicted RBP7.86□□□□□ -1.15
USP28-202ENST00000535607 PAK2Q13177 524 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 EXOSC6Q5RKV6 272 aaKnown RBP7.86□□□□□ -1.15
USP28-202ENST00000535607 INTS3Q68E01 1043 aaKnown RBP7.86□□□□□ -1.15
USP28-202ENST00000535607 HDXQ7Z353 690 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 UBASH3BQ8TF42 649 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 ARHGAP45Q92619 1136 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 RHOVQ96L33 236 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 TSPY26PQ9H489 355 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 PCDHB5Q9Y5E4 795 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 CDK12Q9NYV4 1490 aaPredicted RBP7.86□□□□□ -1.15
USP28-202ENST00000535607 CRYBG1Q9Y4K1 1723 aa7.86□□□□□ -1.15
USP28-202ENST00000535607 KIF24Q5T7B8 1368 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 SART1O43290 800 aaKnown RBP7.85□□□□□ -1.15
USP28-202ENST00000535607 MCCP23508 829 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 DNAJA1P31689 397 aaKnown RBP7.85□□□□□ -1.15
USP28-202ENST00000535607 FAM193AP78312 1265 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 ARID5AQ03989 594 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 BRINP3Q76B58 766 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 STK35Q8TDR2 534 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 GPBAR1Q8TDU6 330 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 GATAD2BQ8WXI9 593 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 NKD1Q969G9 470 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 FEZ1Q99689 392 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 CCDC86Q9H6F5 360 aaKnown RBP7.85□□□□□ -1.15
USP28-202ENST00000535607 ZBTB40Q9NUA8 1239 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 ADAMTS1Q9UHI8 967 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 KIF3AQ9Y496 699 aa7.85□□□□□ -1.15
USP28-202ENST00000535607 COL22A1Q8NFW1 1626 aaPredicted RBP7.85□□□□□ -1.15
USP28-202ENST00000535607 C9orf172C9J069 976 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 FYB1O15117 783 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 TOM1O60784 492 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 TRIM27P14373 513 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 LIG1P18858 919 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 ZNF252P-AS1Q0IIN9 211 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 MPP2Q14168 576 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 AKAP4Q5JQC9 854 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 ANKRD45Q5TZF3 282 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 FBXL19Q6PCT2 694 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 PDZD3Q86UT5 571 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 COG3Q96JB2 828 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 NT5C1AQ9BXI3 368 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 CEP41Q9BYV8 373 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 LMBRD1Q9NUN5 540 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 PPP1R1BQ9UD71 204 aaPredicted RBP7.84□□□□□ -1.15
USP28-202ENST00000535607 AP4E1Q9UPM8 1137 aa7.84□□□□□ -1.15
USP28-202ENST00000535607 COL16A1Q07092 1604 aaPredicted RBP7.84□□□□□ -1.15
USP28-202ENST00000535607 RTL1A6NKG5 1358 aa7.84□□□□□ -1.16
USP28-202ENST00000535607 ABCA3Q99758 1704 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 NFAT5O94916 1531 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 CCDC66A2RUB6 948 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 TLR3O15455 904 aaKnown RBP7.83□□□□□ -1.16
USP28-202ENST00000535607 ADAM11O75078 769 aa7.83□□□□□ -1.16
USP28-202ENST00000535607 U2AF1L5P0DN76 240 aaPredicted RBP7.83□□□□□ -1.16
USP28-202ENST00000535607 TNNI2P48788 182 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms