RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 SLF1Q9BQI6 1058 aa13.86□□□□□ -0.19
CMTM1-216ENST00000533078 MTIF3Q9H2K0 278 aaKnown RBP13.86□□□□□ -0.19
CMTM1-216ENST00000533078 BOLA2Q9H3K6 86 aa13.86□□□□□ -0.19
CMTM1-216ENST00000533078 CHMP4BQ9H444 224 aaKnown RBP13.86□□□□□ -0.19
CMTM1-216ENST00000533078 MKNK2Q9HBH9 465 aa13.86□□□□□ -0.19
CMTM1-216ENST00000533078 ARPP21Q9UBL0 812 aaPredicted RBP13.86□□□□□ -0.19
CMTM1-216ENST00000533078 SLC4A4Q9Y6R1 1079 aa13.86□□□□□ -0.19
CMTM1-216ENST00000533078 SYNRGQ9UMZ2 1314 aa13.86□□□□□ -0.19
CMTM1-216ENST00000533078 PARP14Q460N5 1801 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 TTC28Q96AY4 2481 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 TLR3O15455 904 aaKnown RBP13.85□□□□□ -0.19
CMTM1-216ENST00000533078 ZBED4O75132 1171 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 ADAMTS4O75173 837 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 DUSP11O75319 330 aaKnown RBP13.85□□□□□ -0.19
CMTM1-216ENST00000533078 TIMP1P01033 207 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 ZNF865P0CJ78 1059 aaPredicted RBP13.85□□□□□ -0.19
CMTM1-216ENST00000533078 TAL1P17542 331 aaPredicted RBP13.85□□□□□ -0.19
CMTM1-216ENST00000533078 ITGB8P26012 769 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 SLC4A3P48751 1232 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 HNRNPUQ00839 825 aaKnown RBP eCLIP13.85□□□□□ -0.19
CMTM1-216ENST00000533078 FAAP100Q0VG06 881 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 SIAH1Q8IUQ4 282 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 RPAP2Q8IXW5 612 aaPredicted RBP13.85□□□□□ -0.19
CMTM1-216ENST00000533078 TMEM199Q8N511 208 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 IL27Q8NEV9 243 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 ZNF576Q9H609 170 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 ZNF287Q9HBT7 754 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 ZNF214Q9UL59 606 aaPredicted RBP13.85□□□□□ -0.19
CMTM1-216ENST00000533078 ELP1O95163 1332 aa13.85□□□□□ -0.19
CMTM1-216ENST00000533078 CYP2D7A0A087X1C5 515 aa13.84□□□□□ -0.19
CMTM1-216ENST00000533078 C6orf222P0C671 652 aaPredicted RBP13.84□□□□□ -0.19
CMTM1-216ENST00000533078 ATP5JP18859 108 aa13.84□□□□□ -0.19
CMTM1-216ENST00000533078 EPHB4P54760 987 aa13.84□□□□□ -0.19
CMTM1-216ENST00000533078 GRIN2CQ14957 1233 aa13.84□□□□□ -0.19
CMTM1-216ENST00000533078 UBE3CQ15386 1083 aa13.84□□□□□ -0.19
CMTM1-216ENST00000533078 KCNA10Q16322 511 aa13.84□□□□□ -0.19
CMTM1-216ENST00000533078 MFSD5Q6N075 450 aa13.84□□□□□ -0.19
CMTM1-216ENST00000533078 PSRC1Q6PGN9 363 aaPredicted RBP13.84□□□□□ -0.19
CMTM1-216ENST00000533078 PRPF38AQ8NAV1 312 aaKnown RBP13.84□□□□□ -0.19
CMTM1-216ENST00000533078 LENG1Q96BZ8 264 aaPredicted RBP13.84□□□□□ -0.19
CMTM1-216ENST00000533078 FBXO40Q9UH90 709 aa13.84□□□□□ -0.19
CMTM1-216ENST00000533078 ZBED9Q6R2W3 1325 aa13.84□□□□□ -0.19
CMTM1-216ENST00000533078 A0A0U1RQG5 324 aaPredicted RBP13.83□□□□□ -0.2
CMTM1-216ENST00000533078 MAMDC4Q6UXC1 1216 aa13.83□□□□□ -0.2
CMTM1-216ENST00000533078 ZNF467Q7Z7K2 595 aaPredicted RBP13.83□□□□□ -0.2
CMTM1-216ENST00000533078 ANKRD35Q8N283 1001 aa13.83□□□□□ -0.2
CMTM1-216ENST00000533078 PANK1Q8TE04 598 aa13.83□□□□□ -0.2
CMTM1-216ENST00000533078 HAUS7Q99871 368 aa13.83□□□□□ -0.2
CMTM1-216ENST00000533078 ABHD16BQ9H3Z7 469 aa13.83□□□□□ -0.2
CMTM1-216ENST00000533078 MSRAQ9UJ68 235 aa13.83□□□□□ -0.2
CMTM1-216ENST00000533078 TNFRSF10AO00220 468 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 CST5P28325 142 aaPredicted RBP13.82□□□□□ -0.2
CMTM1-216ENST00000533078 ACVR2BQ13705 512 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 CTR9Q6PD62 1173 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 CPXCR1Q8N123 301 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 KLHDC9Q8NEP7 349 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 REPS2Q8NFH8 660 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 KIFC2Q96AC6 838 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.82□□□□□ -0.2
CMTM1-216ENST00000533078 TBX21Q9UL17 535 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 ISY1Q9ULR0 285 aaKnown RBP13.82□□□□□ -0.2
CMTM1-216ENST00000533078 DDX19BQ9UMR2 479 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 MYH7P12883 1935 aa13.82□□□□□ -0.2
CMTM1-216ENST00000533078 F5H6K3 240 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 ATP2A1O14983 1001 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 ASGR1P07306 291 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 KLRC3Q07444 240 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 RAB30Q15771 203 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 GNASQ5JWF2 1037 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 NOL8Q76FK4 1167 aaKnown RBP13.81□□□□□ -0.2
CMTM1-216ENST00000533078 ZNF444Q8N0Y2 327 aaPredicted RBP13.81□□□□□ -0.2
CMTM1-216ENST00000533078 CHST13Q8NET6 341 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 ATXN2LQ8WWM7 1075 aaKnown RBP13.81□□□□□ -0.2
CMTM1-216ENST00000533078 PPM1EQ8WY54 764 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 NUP88Q99567 741 aaPredicted RBP13.81□□□□□ -0.2
CMTM1-216ENST00000533078 TSPYL2Q9H2G4 693 aaPredicted RBP13.81□□□□□ -0.2
CMTM1-216ENST00000533078 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.81□□□□□ -0.2
CMTM1-216ENST00000533078 NYAP2Q9P242 653 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 FEM1BQ9UK73 627 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 MYO9BQ13459 2157 aa13.81□□□□□ -0.2
CMTM1-216ENST00000533078 MINDY4BA8MYZ0 360 aa13.8□□□□□ -0.2
CMTM1-216ENST00000533078 ARVCFO00192 962 aa13.8□□□□□ -0.2
CMTM1-216ENST00000533078 SNAI1O95863 264 aaPredicted RBP13.8□□□□□ -0.2
CMTM1-216ENST00000533078 NDUFB10O96000 172 aa13.8□□□□□ -0.2
CMTM1-216ENST00000533078 FDX1P10109 184 aa13.8□□□□□ -0.2
CMTM1-216ENST00000533078 OAZ1P54368 228 aa13.8□□□□□ -0.2
CMTM1-216ENST00000533078 GIMAP6Q6P9H5 292 aa13.8□□□□□ -0.2
CMTM1-216ENST00000533078 GPATCH3Q96I76 525 aa13.8□□□□□ -0.2
CMTM1-216ENST00000533078 THEGQ9P2T0 379 aa13.8□□□□□ -0.2
CMTM1-216ENST00000533078 DNAJC25-GNG10A0A024R161 153 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 ZEB2O60315 1214 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 TDO2P48775 406 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 GJA9P57773 515 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 IKQ13123 557 aaPredicted RBP13.79□□□□□ -0.2
CMTM1-216ENST00000533078 LRRFIP1Q32MZ4 808 aaKnown RBP13.79□□□□□ -0.2
CMTM1-216ENST00000533078 CCDC144BQ3MJ40 725 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 SLFNL1Q499Z3 407 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 SBK1Q52WX2 424 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 TMEM240Q5SV17 173 aa13.79□□□□□ -0.2
CMTM1-216ENST00000533078 AKNAD1Q5T1N1 836 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms