RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SLC25A27O95847 323 aa23.31■■□□□ 1.32
CPSF1-209ENST00000532725 FDX1P10109 184 aa23.31■■□□□ 1.32
CPSF1-209ENST00000532725 TSGA10IPQ3SY00 556 aa23.31■■□□□ 1.32
CPSF1-209ENST00000532725 PNMA1Q8ND90 353 aa23.31■■□□□ 1.32
CPSF1-209ENST00000532725 ZNF333Q96JL9 665 aa23.31■■□□□ 1.32
CPSF1-209ENST00000532725 MROH8Q9H579 483 aa23.31■■□□□ 1.32
CPSF1-209ENST00000532725 KAT14Q9H8E8 782 aa23.31■■□□□ 1.32
CPSF1-209ENST00000532725 ISY1Q9ULR0 285 aaKnown RBP23.31■■□□□ 1.32
CPSF1-209ENST00000532725 CENPFP49454 3210 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 SLC15A5A6NIM6 579 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 STRNO43815 780 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 ANTXR2P58335 489 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 ZNF543Q08ER8 600 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 CCDC96Q2M329 555 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 WDR78Q5VTH9 848 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 CHST3Q7LGC8 479 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 NCAPG2Q86XI2 1143 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 SLAIN1Q8ND83 568 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 IGDCC4Q8TDY8 1250 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 SOCS4Q8WXH5 440 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 PRR12Q9ULL5 1215 aa23.3■■□□□ 1.32
CPSF1-209ENST00000532725 IFIT3O14879 490 aaKnown RBP23.29■■□□□ 1.32
CPSF1-209ENST00000532725 XRCC5P13010 732 aaKnown RBP23.29■■□□□ 1.32
CPSF1-209ENST00000532725 CYP2B6P20813 491 aa23.29■■□□□ 1.32
CPSF1-209ENST00000532725 COL9A3Q14050 684 aaPredicted RBP23.29■■□□□ 1.32
CPSF1-209ENST00000532725 GRB14Q14449 540 aa23.29■■□□□ 1.32
CPSF1-209ENST00000532725 IFIT1BQ5T764 474 aaKnown RBP23.29■■□□□ 1.32
CPSF1-209ENST00000532725 RNF20Q5VTR2 975 aa23.29■■□□□ 1.32
CPSF1-209ENST00000532725 RASEFQ8IZ41 740 aa23.29■■□□□ 1.32
CPSF1-209ENST00000532725 CWC22Q9HCG8 908 aaKnown RBP23.29■■□□□ 1.32
CPSF1-209ENST00000532725 GPCPD1Q9NPB8 672 aa23.29■■□□□ 1.32
CPSF1-209ENST00000532725 FRMPD2Q68DX3 1309 aaPredicted RBP23.29■■□□□ 1.32
CPSF1-209ENST00000532725 ELNP15502 786 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 SLC16A2P36021 539 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 OAZ1P54368 228 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 IKQ13123 557 aaPredicted RBP23.28■■□□□ 1.32
CPSF1-209ENST00000532725 MAP2K5Q13163 448 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 CPXCR1Q8N123 301 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 KCNB2Q92953 911 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 TEX13BQ9BXU2 312 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 SENP2Q9HC62 589 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 RAVER2Q9HCJ3 691 aaKnown RBP23.28■■□□□ 1.32
CPSF1-209ENST00000532725 RIPK3Q9Y572 518 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 IVNS1ABPQ9Y6Y0 642 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 PLXNB2O15031 1838 aa23.28■■□□□ 1.32
CPSF1-209ENST00000532725 REC8O95072 547 aa23.27■■□□□ 1.32
CPSF1-209ENST00000532725 RGS2P41220 211 aa23.27■■□□□ 1.32
CPSF1-209ENST00000532725 MTA3Q9BTC8 594 aa23.27■■□□□ 1.32
CPSF1-209ENST00000532725 CTDP1Q9Y5B0 961 aaPredicted RBP23.27■■□□□ 1.32
CPSF1-209ENST00000532725 ZNF536O15090 1300 aa23.27■■□□□ 1.32
CPSF1-209ENST00000532725 COL11A1P12107 1806 aaPredicted RBP23.26■■□□□ 1.31
CPSF1-209ENST00000532725 HOXC6P09630 235 aa23.26■■□□□ 1.31
CPSF1-209ENST00000532725 GOLGA8HP0CJ92 632 aa23.26■■□□□ 1.31
CPSF1-209ENST00000532725 MCM5P33992 734 aa23.26■■□□□ 1.31
CPSF1-209ENST00000532725 COPB2P35606 906 aa23.26■■□□□ 1.31
CPSF1-209ENST00000532725 SART3Q15020 963 aaKnown RBP23.26■■□□□ 1.31
CPSF1-209ENST00000532725 GPATCH4Q5T3I0 446 aaKnown RBP23.26■■□□□ 1.31
CPSF1-209ENST00000532725 SYDE2Q5VT97 1194 aa23.26■■□□□ 1.31
CPSF1-209ENST00000532725 SNRNP48Q6IEG0 339 aaKnown RBP23.26■■□□□ 1.31
CPSF1-209ENST00000532725 ABRAQ8N0Z2 381 aa23.26■■□□□ 1.31
CPSF1-209ENST00000532725 ERICH2A1L162 156 aa23.25■■□□□ 1.31
CPSF1-209ENST00000532725 PRC1O43663 620 aa23.25■■□□□ 1.31
CPSF1-209ENST00000532725 HSPA4P34932 840 aa23.25■■□□□ 1.31
CPSF1-209ENST00000532725 SNAP25P60880 206 aa23.25■■□□□ 1.31
CPSF1-209ENST00000532725 WTAPQ15007 396 aa23.25■■□□□ 1.31
CPSF1-209ENST00000532725 TMEM67Q5HYA8 995 aa23.25■■□□□ 1.31
CPSF1-209ENST00000532725 BIN2Q9UBW5 565 aaPredicted RBP23.25■■□□□ 1.31
CPSF1-209ENST00000532725 EPB41L2O43491 1005 aaKnown RBP23.24■■□□□ 1.31
CPSF1-209ENST00000532725 COBLO75128 1261 aa23.24■■□□□ 1.31
CPSF1-209ENST00000532725 FCER1AP12319 257 aa23.24■■□□□ 1.31
CPSF1-209ENST00000532725 ZKSCAN1P17029 563 aaPredicted RBP23.24■■□□□ 1.31
CPSF1-209ENST00000532725 ADORA2AP29274 412 aa23.24■■□□□ 1.31
CPSF1-209ENST00000532725 MTFR1Q15390 333 aa23.24■■□□□ 1.31
CPSF1-209ENST00000532725 ADCK5Q3MIX3 580 aa23.24■■□□□ 1.31
CPSF1-209ENST00000532725 TRIB2Q92519 343 aa23.24■■□□□ 1.31
CPSF1-209ENST00000532725 AGBL1Q96MI9 1066 aa23.24■■□□□ 1.31
CPSF1-209ENST00000532725 NEK1Q96PY6 1258 aa23.24■■□□□ 1.31
CPSF1-209ENST00000532725 RANBP17Q9H2T7 1088 aaKnown RBP23.24■■□□□ 1.31
CPSF1-209ENST00000532725 GPHNQ9NQX3 736 aaPredicted RBP23.24■■□□□ 1.31
CPSF1-209ENST00000532725 MYCP01106 439 aaPredicted RBP23.23■■□□□ 1.31
CPSF1-209ENST00000532725 INHAP05111 366 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 PARP1P09874 1014 aaKnown RBP23.23■■□□□ 1.31
CPSF1-209ENST00000532725 SLC4A3P48751 1232 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 UBXN2AP68543 259 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 CCL14Q16627 93 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 DPP9Q86TI2 863 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 TRMT44Q8IYL2 757 aaKnown RBP23.23■■□□□ 1.31
CPSF1-209ENST00000532725 NPLOC4Q8TAT6 608 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 TMEM87BQ96K49 555 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 APBA2Q99767 749 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 USP26Q9BXU7 913 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 UBA5Q9GZZ9 404 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 LY9Q9HBG7 655 aa23.23■■□□□ 1.31
CPSF1-209ENST00000532725 KIAA0100Q14667 2235 aaKnown RBP23.23■■□□□ 1.31
CPSF1-209ENST00000532725 IGHA2P01877 340 aa23.22■■□□□ 1.31
CPSF1-209ENST00000532725 HMGCRP04035 888 aa23.22■■□□□ 1.31
CPSF1-209ENST00000532725 SOX10P56693 466 aa23.22■■□□□ 1.31
CPSF1-209ENST00000532725 EXOSC10Q01780 885 aaKnown RBP23.22■■□□□ 1.31
CPSF1-209ENST00000532725 TROAPQ12815 778 aa23.22■■□□□ 1.31
CPSF1-209ENST00000532725 KRT32Q14532 448 aa23.22■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms