RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SLC27A2O14975 620 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 ATP2A1O14983 1001 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 SLC25A27O95847 323 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 PDHBP11177 359 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 GRB14Q14449 540 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 CCDC96Q2M329 555 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 WDR78Q5VTH9 848 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 CREB3L3Q68CJ9 461 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 KCTD1Q719H9 257 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 CYB5R4Q7L1T6 521 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 KIFC2Q96AC6 838 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 APBA2Q99767 749 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 TEX13BQ9BXU2 312 aa17.66■□□□□ 0.42
CPSF1-208ENST00000532560 ZBED4O75132 1171 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 XRCC5P13010 732 aaKnown RBP17.65■□□□□ 0.42
CPSF1-208ENST00000532560 PTPREP23469 700 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 STAT3P40763 770 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 RGS2P41220 211 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 OAZ1P54368 228 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 SEC23AQ15436 765 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 BTNL9Q6UXG8 535 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 MB21D2Q8IYB1 491 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-208ENST00000532560 PNMA1Q8ND90 353 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 KAT14Q9H8E8 782 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 MTMR7Q9Y216 660 aa17.65■□□□□ 0.42
CPSF1-208ENST00000532560 STRNO43815 780 aa17.64■□□□□ 0.41
CPSF1-208ENST00000532560 ELNP15502 786 aa17.64■□□□□ 0.41
CPSF1-208ENST00000532560 ZNF543Q08ER8 600 aa17.64■□□□□ 0.41
CPSF1-208ENST00000532560 IKQ13123 557 aaPredicted RBP17.64■□□□□ 0.41
CPSF1-208ENST00000532560 MAP2K5Q13163 448 aa17.64■□□□□ 0.41
CPSF1-208ENST00000532560 IFIT1BQ5T764 474 aaKnown RBP17.64■□□□□ 0.41
CPSF1-208ENST00000532560 RNF20Q5VTR2 975 aa17.64■□□□□ 0.41
CPSF1-208ENST00000532560 SNRNP48Q6IEG0 339 aaKnown RBP17.64■□□□□ 0.41
CPSF1-208ENST00000532560 NCAPG2Q86XI2 1143 aa17.64■□□□□ 0.41
CPSF1-208ENST00000532560 TRMT44Q8IYL2 757 aaKnown RBP17.64■□□□□ 0.41
CPSF1-208ENST00000532560 ABRAQ8N0Z2 381 aa17.64■□□□□ 0.41
CPSF1-208ENST00000532560 CTDP1Q9Y5B0 961 aaPredicted RBP17.64■□□□□ 0.41
CPSF1-208ENST00000532560 HMGCRP04035 888 aa17.63■□□□□ 0.41
CPSF1-208ENST00000532560 INHAP05111 366 aa17.63■□□□□ 0.41
CPSF1-208ENST00000532560 HOXC6P09630 235 aa17.63■□□□□ 0.41
CPSF1-208ENST00000532560 CYP2B6P20813 491 aa17.63■□□□□ 0.41
CPSF1-208ENST00000532560 SOX10P56693 466 aa17.63■□□□□ 0.41
CPSF1-208ENST00000532560 UBXN2AP68543 259 aa17.63■□□□□ 0.41
CPSF1-208ENST00000532560 SART3Q15020 963 aaKnown RBP17.63■□□□□ 0.41
CPSF1-208ENST00000532560 GPATCH4Q5T3I0 446 aaKnown RBP17.63■□□□□ 0.41
CPSF1-208ENST00000532560 CHMP4CQ96CF2 233 aa17.63■□□□□ 0.41
CPSF1-208ENST00000532560 PRR12Q9ULL5 1215 aa17.63■□□□□ 0.41
CPSF1-208ENST00000532560 ADORA2AP29274 412 aa17.62■□□□□ 0.41
CPSF1-208ENST00000532560 ANTXR2P58335 489 aa17.62■□□□□ 0.41
CPSF1-208ENST00000532560 SYDE2Q5VT97 1194 aa17.62■□□□□ 0.41
CPSF1-208ENST00000532560 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.62■□□□□ 0.41
CPSF1-208ENST00000532560 TRIB2Q92519 343 aa17.62■□□□□ 0.41
CPSF1-208ENST00000532560 MTA3Q9BTC8 594 aa17.62■□□□□ 0.41
CPSF1-208ENST00000532560 BIN2Q9UBW5 565 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-208ENST00000532560 FRMPD2Q68DX3 1309 aaPredicted RBP17.62■□□□□ 0.41
CPSF1-208ENST00000532560 ERICH2A1L162 156 aa17.61■□□□□ 0.41
CPSF1-208ENST00000532560 IFIT3O14879 490 aaKnown RBP17.61■□□□□ 0.41
CPSF1-208ENST00000532560 REC8O95072 547 aa17.61■□□□□ 0.41
CPSF1-208ENST00000532560 FCER1AP12319 257 aa17.61■□□□□ 0.41
CPSF1-208ENST00000532560 ZKSCAN1P17029 563 aaPredicted RBP17.61■□□□□ 0.41
CPSF1-208ENST00000532560 ASPRV1Q53RT3 343 aa17.61■□□□□ 0.41
CPSF1-208ENST00000532560 TTBK2Q6IQ55 1244 aa17.61■□□□□ 0.41
CPSF1-208ENST00000532560 CPXCR1Q8N123 301 aa17.61■□□□□ 0.41
CPSF1-208ENST00000532560 RANBP17Q9H2T7 1088 aaKnown RBP17.61■□□□□ 0.41
CPSF1-208ENST00000532560 RAVER2Q9HCJ3 691 aaKnown RBP17.61■□□□□ 0.41
CPSF1-208ENST00000532560 GPCPD1Q9NPB8 672 aa17.61■□□□□ 0.41
CPSF1-208ENST00000532560 ZNF536O15090 1300 aa17.61■□□□□ 0.41
CPSF1-208ENST00000532560 CENPFP49454 3210 aa17.6■□□□□ 0.41
CPSF1-208ENST00000532560 SLC16A2P36021 539 aa17.6■□□□□ 0.41
CPSF1-208ENST00000532560 MTFR1Q15390 333 aa17.6■□□□□ 0.41
CPSF1-208ENST00000532560 TSGA10IPQ3SY00 556 aa17.6■□□□□ 0.41
CPSF1-208ENST00000532560 MMP19Q99542 508 aa17.6■□□□□ 0.41
CPSF1-208ENST00000532560 TMEM106CQ9BVX2 250 aa17.6■□□□□ 0.41
CPSF1-208ENST00000532560 RIPK3Q9Y572 518 aa17.6■□□□□ 0.41
CPSF1-208ENST00000532560 EPB41L2O43491 1005 aaKnown RBP17.59■□□□□ 0.41
CPSF1-208ENST00000532560 CCL5P13501 91 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 MCM5P33992 734 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 RGS19P49795 217 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 KCTD2Q14681 263 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 WTAPQ15007 396 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 CCL14Q16627 93 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 TMEM67Q5HYA8 995 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 MAP3K21Q5TCX8 1036 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 CHST3Q7LGC8 479 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 CHST13Q8NET6 341 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 NPLOC4Q8TAT6 608 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 IGDCC4Q8TDY8 1250 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 SLC5A4Q9NY91 659 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 FBXO40Q9UH90 709 aa17.59■□□□□ 0.41
CPSF1-208ENST00000532560 KIAA0100Q14667 2235 aaKnown RBP17.58■□□□□ 0.4
CPSF1-208ENST00000532560 POTEFA5A3E0 1075 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 PRC1O43663 620 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 COBLO75128 1261 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 MYCP01106 439 aaPredicted RBP17.58■□□□□ 0.4
CPSF1-208ENST00000532560 IGHA2P01877 340 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 ICAM1P05362 532 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 PARP1P09874 1014 aaKnown RBP17.58■□□□□ 0.4
CPSF1-208ENST00000532560 GOLGA8HP0CJ92 632 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 KRT32Q14532 448 aa17.58■□□□□ 0.4
CPSF1-208ENST00000532560 TKFCQ3LXA3 575 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms