RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 KCNQ2O43526 872 aa15.95■□□□□ 0.14
USP48-213ENST00000529637 IRAK1P51617 712 aa15.95■□□□□ 0.14
USP48-213ENST00000529637 CUL4BQ13620 913 aa15.95■□□□□ 0.14
USP48-213ENST00000529637 TUBB2AQ13885 445 aa15.95■□□□□ 0.14
USP48-213ENST00000529637 C3orf67Q6ZVT6 689 aa15.95■□□□□ 0.14
USP48-213ENST00000529637 TUBB2BQ9BVA1 445 aa15.95■□□□□ 0.14
USP48-213ENST00000529637 VPS16Q9H269 839 aa15.95■□□□□ 0.14
USP48-213ENST00000529637 AATFQ9NY61 560 aaKnown RBP eCLIP15.95■□□□□ 0.14
USP48-213ENST00000529637 SRPRBQ9Y5M8 271 aaKnown RBP15.95■□□□□ 0.14
USP48-213ENST00000529637 SYNRGQ9UMZ2 1314 aa15.95■□□□□ 0.14
USP48-213ENST00000529637 ERCC5P28715 1186 aaPredicted RBP15.94■□□□□ 0.14
USP48-213ENST00000529637 HNRNPH1P31943 449 aaKnown RBP15.94■□□□□ 0.14
USP48-213ENST00000529637 CDKAL1Q5VV42 579 aa15.94■□□□□ 0.14
USP48-213ENST00000529637 SPATA20Q8TB22 786 aa15.94■□□□□ 0.14
USP48-213ENST00000529637 VIPAS39Q9H9C1 493 aa15.94■□□□□ 0.14
USP48-213ENST00000529637 NMT2O60551 498 aa15.94■□□□□ 0.14
USP48-213ENST00000529637 MRPS25P82663 173 aaKnown RBP15.94■□□□□ 0.14
USP48-213ENST00000529637 TRAPPC11Q7Z392 1133 aa15.94■□□□□ 0.14
USP48-213ENST00000529637 CTCFLQ8NI51 663 aaPredicted RBP15.94■□□□□ 0.14
USP48-213ENST00000529637 RNF26Q9BY78 433 aaPredicted RBP15.94■□□□□ 0.14
USP48-213ENST00000529637 SAMM50Q9Y512 469 aa15.94■□□□□ 0.14
USP48-213ENST00000529637 EARS2Q5JPH6 523 aaKnown RBP15.94■□□□□ 0.14
USP48-213ENST00000529637 CNGA4Q8IV77 575 aa15.94■□□□□ 0.14
USP48-213ENST00000529637 ZNF185O15231 689 aa15.93■□□□□ 0.14
USP48-213ENST00000529637 PSEN1P49768 467 aa15.93■□□□□ 0.14
USP48-213ENST00000529637 EVX2Q03828 476 aa15.93■□□□□ 0.14
USP48-213ENST00000529637 CT47A1Q5JQC4 288 aaPredicted RBP15.93■□□□□ 0.14
USP48-213ENST00000529637 KANK3Q6NY19 840 aa15.93■□□□□ 0.14
USP48-213ENST00000529637 MARCH10Q8NA82 808 aaPredicted RBP15.93■□□□□ 0.14
USP48-213ENST00000529637 SYMPKQ92797 1274 aaKnown RBP15.93■□□□□ 0.14
USP48-213ENST00000529637 NUP88Q99567 741 aaPredicted RBP15.93■□□□□ 0.14
USP48-213ENST00000529637 POLD4Q9HCU8 107 aa15.93■□□□□ 0.14
USP48-213ENST00000529637 MNAT1P51948 309 aa15.93■□□□□ 0.14
USP48-213ENST00000529637 NLRP5P59047 1200 aa15.93■□□□□ 0.14
USP48-213ENST00000529637 SWT1Q5T5J6 900 aaKnown RBP15.93■□□□□ 0.14
USP48-213ENST00000529637 SHOX2O60902 331 aaPredicted RBP15.92■□□□□ 0.14
USP48-213ENST00000529637 TUBB4BP68371 445 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 EP400NLQ6ZTU2 488 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 TMTC1Q8IUR5 882 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 ELOA2Q8IYF1 753 aaPredicted RBP15.92■□□□□ 0.14
USP48-213ENST00000529637 BCAS4Q8TDM0 211 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 CELF1Q92879 486 aaKnown RBP15.92■□□□□ 0.14
USP48-213ENST00000529637 SELENOOQ9BVL4 669 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 PPP1R3GB7ZBB8 358 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 PDE2AO00408 941 aaPredicted RBP15.92■□□□□ 0.14
USP48-213ENST00000529637 KRT31Q15323 416 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 SEC23AQ15436 765 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 TRIML1Q8N9V2 468 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 RASSF8Q8NHQ8 419 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 N4BP3O15049 544 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 FECHP22830 423 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 KLRK1P26718 216 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 KRT9P35527 623 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 FAM76AQ8TAV0 307 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 TAB2Q9NYJ8 693 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 MINPP1Q9UNW1 487 aa15.92■□□□□ 0.14
USP48-213ENST00000529637 GOLGA6CA6NDK9 693 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 TSPY2A6NKD2 308 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 GOLGA6DP0CG33 693 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 MCM7P33993 719 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 GSCP56915 257 aaPredicted RBP15.91■□□□□ 0.14
USP48-213ENST00000529637 PIK3AP1Q6ZUJ8 805 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 CRACR2AQ9BSW2 395 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 CXorf56Q9H5V9 222 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 GOLGA6AQ9NYA3 693 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 CTNND2Q9UQB3 1225 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 DISP2A7MBM2 1401 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 EBAG9O00559 213 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 UBE4AQ14139 1066 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 RRP36Q96EU6 259 aaKnown RBP15.91■□□□□ 0.14
USP48-213ENST00000529637 FAM84BQ96KN1 310 aaPredicted RBP15.91■□□□□ 0.14
USP48-213ENST00000529637 CEP89Q96ST8 783 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 RIOK1Q9BRS2 568 aaKnown RBP15.91■□□□□ 0.14
USP48-213ENST00000529637 BLZF1Q9H2G9 400 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 SLIT2O94813 1529 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 GRIN2DO15399 1336 aa15.91■□□□□ 0.14
USP48-213ENST00000529637 CYP2D6P10635 497 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 TTC38Q5R3I4 469 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 FKBP15Q5T1M5 1219 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 CYP26C1Q6V0L0 522 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 EPN1Q9Y6I3 576 aaPredicted RBP15.9■□□□□ 0.14
USP48-213ENST00000529637 WNT7AO00755 349 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 TUBBP07437 444 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 PTGDRQ13258 359 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 EZH2Q15910 746 aaKnown RBP15.9■□□□□ 0.14
USP48-213ENST00000529637 PKN1Q16512 942 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 FILIP1LQ4L180 1135 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 CCDC91Q7Z6B0 441 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 HDAC7Q8WUI4 952 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 PAGE5Q96GU1 130 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 NDUFA10O95299 355 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 MMP14P50281 582 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 ZNF579Q8NAF0 562 aaKnown RBP15.9■□□□□ 0.14
USP48-213ENST00000529637 SHISA4Q96DD7 197 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 CRNKL1Q9BZJ0 848 aaKnown RBP15.9■□□□□ 0.14
USP48-213ENST00000529637 SAR1BQ9Y6B6 198 aa15.9■□□□□ 0.14
USP48-213ENST00000529637 ABCA3Q99758 1704 aa15.89■□□□□ 0.13
USP48-213ENST00000529637 PES1O00541 588 aaKnown RBP15.89■□□□□ 0.13
USP48-213ENST00000529637 CCNI2Q6ZMN8 369 aaPredicted RBP15.89■□□□□ 0.13
USP48-213ENST00000529637 MAPK8IP1Q9UQF2 711 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms