RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 RASIP1Q5U651 963 aa12.66□□□□□ -0.38
CPSF1-203ENST00000527916 SAMD1Q6SPF0 538 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-203ENST00000527916 TMEM179Q6ZVK1 233 aa12.66□□□□□ -0.38
CPSF1-203ENST00000527916 VTI1AQ96AJ9 217 aa12.66□□□□□ -0.38
CPSF1-203ENST00000527916 ATG4CQ96DT6 458 aa12.66□□□□□ -0.38
CPSF1-203ENST00000527916 DNAJC2Q99543 621 aaKnown RBP12.66□□□□□ -0.38
CPSF1-203ENST00000527916 CRNKL1Q9BZJ0 848 aaKnown RBP12.66□□□□□ -0.38
CPSF1-203ENST00000527916 BOLA2Q9H3K6 86 aa12.66□□□□□ -0.38
CPSF1-203ENST00000527916 SLC28A3Q9HAS3 691 aa12.66□□□□□ -0.38
CPSF1-203ENST00000527916 ARHGEF10LQ9HCE6 1279 aa12.66□□□□□ -0.38
CPSF1-203ENST00000527916 PAG1Q9NWQ8 432 aa12.66□□□□□ -0.38
CPSF1-203ENST00000527916 CXXC1Q9P0U4 656 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-203ENST00000527916 FAM184BQ9ULE4 1060 aa12.66□□□□□ -0.38
CPSF1-203ENST00000527916 A0A0G2JMZ2 1700 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 ELP1O95163 1332 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 ZNF532Q9HCE3 1301 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 PGK2P07205 417 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 ZNF865P0CJ78 1059 aaPredicted RBP12.65□□□□□ -0.38
CPSF1-203ENST00000527916 TAL1P17542 331 aaPredicted RBP12.65□□□□□ -0.38
CPSF1-203ENST00000527916 ADD2P35612 726 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 ADGRE1Q14246 886 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 KCNA10Q16322 511 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 ZNF792Q3KQV3 632 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 ZNF365Q70YC5 407 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 C16orf59Q7L2K0 433 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 MSL3Q8N5Y2 521 aaKnown RBP12.65□□□□□ -0.38
CPSF1-203ENST00000527916 PCSK9Q8NBP7 692 aaKnown RBP12.65□□□□□ -0.38
CPSF1-203ENST00000527916 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.65□□□□□ -0.382e-12■■■■■ 30.3
CPSF1-203ENST00000527916 SPC25Q9HBM1 224 aa12.65□□□□□ -0.38
CPSF1-203ENST00000527916 TCF20Q9UGU0 1960 aaKnown RBP12.65□□□□□ -0.38
CPSF1-203ENST00000527916 SYNRGQ9UMZ2 1314 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 WDR46O15213 610 aaKnown RBP12.64□□□□□ -0.39
CPSF1-203ENST00000527916 TLR3O15455 904 aaKnown RBP12.64□□□□□ -0.39
CPSF1-203ENST00000527916 CSF2RAP15509 400 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 GABPAQ06546 454 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 TMEM132BQ14DG7 1078 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 UBE3CQ15386 1083 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 RIOX2Q8IUF8 465 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 SPICE1Q8N0Z3 855 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 KLHDC9Q8NEP7 349 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 LENG1Q96BZ8 264 aaPredicted RBP12.64□□□□□ -0.39
CPSF1-203ENST00000527916 MCM9Q9NXL9 1143 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 SWAP70Q9UH65 585 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 TMX2Q9Y320 296 aa12.64□□□□□ -0.39
CPSF1-203ENST00000527916 NAV1Q8NEY1 1877 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 DUSP11O75319 330 aaKnown RBP12.63□□□□□ -0.39
CPSF1-203ENST00000527916 ACRP10323 421 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 STAT3P40763 770 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 CDK7P50613 346 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 ICA1Q05084 483 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 KIAA1755Q5JYT7 1200 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 ZSCAN25Q6NSZ9 544 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 HERVK_113Q902F9 699 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 VCPKMTQ9H867 229 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 IL23AQ9NPF7 189 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 DCP1AQ9NPI6 582 aaPredicted RBP12.63□□□□□ -0.39
CPSF1-203ENST00000527916 ATP8A2Q9NTI2 1148 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 ECHDC1Q9NTX5 307 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 MUC6Q6W4X9 2439 aa12.63□□□□□ -0.39
CPSF1-203ENST00000527916 SYNGAP1Q96PV0 1343 aa12.62□□□□□ -0.39
CPSF1-203ENST00000527916 A0A0U1RQG5 324 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-203ENST00000527916 ARVCFO00192 962 aa12.62□□□□□ -0.39
CPSF1-203ENST00000527916 SMARCA5O60264 1052 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-203ENST00000527916 FGBP02675 491 aa12.62□□□□□ -0.39
CPSF1-203ENST00000527916 C6orf222P0C671 652 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-203ENST00000527916 BMP1P13497 986 aa12.62□□□□□ -0.39
CPSF1-203ENST00000527916 CST5P28325 142 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-203ENST00000527916 SKIV2LQ15477 1246 aaKnown RBP12.62□□□□□ -0.39
CPSF1-203ENST00000527916 CCSAPQ6IQ19 270 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-203ENST00000527916 MICALL1Q8N3F8 863 aa12.62□□□□□ -0.39
CPSF1-203ENST00000527916 NECAB3Q96P71 396 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-203ENST00000527916 PPP1R12CQ9BZL4 782 aa12.62□□□□□ -0.39
CPSF1-203ENST00000527916 NKX2-4Q9H2Z4 354 aa12.62□□□□□ -0.39
CPSF1-203ENST00000527916 ZHX1Q9UKY1 873 aaPredicted RBP12.62□□□□□ -0.39
CPSF1-203ENST00000527916 ADAMTS5Q9UNA0 930 aa12.62□□□□□ -0.39
CPSF1-203ENST00000527916 BAZ2AQ9UIF9 1905 aaKnown RBP12.61□□□□□ -0.39
CPSF1-203ENST00000527916 VWA5AO00534 786 aa12.61□□□□□ -0.39
CPSF1-203ENST00000527916 ASGR1P07306 291 aa12.61□□□□□ -0.39
CPSF1-203ENST00000527916 LCORLQ8N3X6 602 aa12.61□□□□□ -0.39
CPSF1-203ENST00000527916 DDX11Q96FC9 970 aa12.61□□□□□ -0.39
CPSF1-203ENST00000527916 GPATCH3Q96I76 525 aa12.61□□□□□ -0.39
CPSF1-203ENST00000527916 CCDC17Q96LX7 622 aa12.61□□□□□ -0.39
CPSF1-203ENST00000527916 BCL11AQ9H165 835 aa12.61□□□□□ -0.39
CPSF1-203ENST00000527916 PCDHB15Q9Y5E8 787 aa12.61□□□□□ -0.39
CPSF1-203ENST00000527916 PRRC2BQ5JSZ5 2229 aaKnown RBP12.61□□□□□ -0.39
CPSF1-203ENST00000527916 MYH8P13535 1937 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 COL11A1P12107 1806 aaPredicted RBP12.6□□□□□ -0.39
CPSF1-203ENST00000527916 RRP1P56182 461 aaKnown RBP12.6□□□□□ -0.39
CPSF1-203ENST00000527916 GNASQ5JWF2 1037 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 TMEM31Q5JXX7 168 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 PPP2R2DQ66LE6 453 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 MAMDC4Q6UXC1 1216 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 FAM126BQ8IXS8 530 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 SDR42E1Q8WUS8 393 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 ARMT1Q9H993 441 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 GOPCQ9HD26 462 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 PPP1R9AQ9ULJ8 1098 aa12.6□□□□□ -0.39
CPSF1-203ENST00000527916 MYADML2A6NDP7 307 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 ERC2O15083 957 aa12.59□□□□□ -0.39
CPSF1-203ENST00000527916 GTPBP6O43824 516 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms