RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 GABPB1Q06547 395 aaPredicted RBP23.98■■□□□ 1.43
VPS28-205ENST00000526204 TRIM14Q14142 442 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 PCDHA6Q9UN73 950 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 PCDHA8Q9Y5H6 950 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 ADGRG1Q9Y653 693 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 USP17L3A6NCW0 530 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 USP17L4A6NCW7 530 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 N4BP3O15049 544 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 WWC2Q6AWC2 1192 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 USP17L1Q7RTZ2 530 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 TGFBRAP1Q8WUH2 860 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 CPLX3Q8WVH0 158 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 NELFBQ8WX92 580 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 KIFC2Q96AC6 838 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 DESI2Q9BSY9 194 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 MRFAP1Q9Y605 127 aa23.98■■□□□ 1.43
VPS28-205ENST00000526204 PALM3A6NDB9 673 aaPredicted RBP23.97■■□□□ 1.43
VPS28-205ENST00000526204 C8orf37Q96NL8 207 aa23.97■■□□□ 1.43
VPS28-205ENST00000526204 ZNF446Q9NWS9 450 aa23.97■■□□□ 1.43
VPS28-205ENST00000526204 H7C1D1 291 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 GYPCP04921 128 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 CASP14P31944 242 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 PRPHP41219 470 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 MTF1Q14872 753 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 TCP11X2Q5H9J9 407 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 TRAPPC3LQ5T215 181 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 RASGRP2Q7LDG7 609 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 HEATR3Q7Z4Q2 680 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 STXBP3O00186 592 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 KCNB1Q14721 858 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 KARSQ15046 597 aaKnown RBP23.96■■□□□ 1.43
VPS28-205ENST00000526204 DIXDC1Q155Q3 683 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 TYW1BQ6NUM6 668 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 RAD9BQ6WBX8 426 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 TMEM47Q9BQJ4 181 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 CCSER1Q9C0I3 900 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 PRDM4Q9UKN5 801 aa23.96■■□□□ 1.43
VPS28-205ENST00000526204 RASA1P20936 1047 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 CCT6AP40227 531 aaKnown RBP23.95■■□□□ 1.42
VPS28-205ENST00000526204 CLCN6P51797 869 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 COPB1P53618 953 aaKnown RBP23.95■■□□□ 1.42
VPS28-205ENST00000526204 TMTC1Q8IUR5 882 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 CNBD1Q8NA66 436 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 RASGRP4Q8TDF6 673 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 CCDC12Q8WUD4 166 aaPredicted RBP23.95■■□□□ 1.42
VPS28-205ENST00000526204 MRPL44Q9H9J2 332 aaKnown RBP23.95■■□□□ 1.42
VPS28-205ENST00000526204 STX8Q9UNK0 236 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 KCNJ18B7U540 433 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 CYTH3O43739 400 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 UBA7P41226 1012 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 KCNJ12Q14500 433 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 NFIXQ14938 502 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 SPZ1Q9BXG8 430 aa23.95■■□□□ 1.42
VPS28-205ENST00000526204 KIF5CO60282 957 aa23.94■■□□□ 1.42
VPS28-205ENST00000526204 PRCPP42785 496 aa23.94■■□□□ 1.42
VPS28-205ENST00000526204 PPP2R3AQ06190 1150 aa23.94■■□□□ 1.42
VPS28-205ENST00000526204 AMIGO3Q86WK7 504 aa23.94■■□□□ 1.42
VPS28-205ENST00000526204 RASSF8Q8NHQ8 419 aa23.94■■□□□ 1.42
VPS28-205ENST00000526204 RTFDC1Q9BY42 306 aaPredicted RBP23.94■■□□□ 1.42
VPS28-205ENST00000526204 CUEDC2Q9H467 287 aa23.94■■□□□ 1.42
VPS28-205ENST00000526204 CDC25AP30304 524 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 FXR1P51114 621 aaKnown RBP eCLIP23.93■■□□□ 1.42
VPS28-205ENST00000526204 INF2Q27J81 1249 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 ADSSL1Q8N142 457 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 GPR161Q8N6U8 529 aaKnown RBP23.93■■□□□ 1.42
VPS28-205ENST00000526204 MAGEF1Q9HAY2 307 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 TTF2Q9UNY4 1162 aaKnown RBP23.93■■□□□ 1.42
VPS28-205ENST00000526204 BAZ2BQ9UIF8 2168 aaKnown RBP23.93■■□□□ 1.42
VPS28-205ENST00000526204 BTAF1O14981 1849 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 KLRF2D3W0D1 207 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 PLCG2P16885 1265 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 STIM1Q13586 685 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 TUBB2AQ13885 445 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 SLC35G1Q2M3R5 365 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 NAALADL2Q58DX5 795 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 TMCO3Q6UWJ1 677 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 AK8Q96MA6 479 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 TUBB2BQ9BVA1 445 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 ZMYND12Q9H0C1 365 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 VPS16Q9H269 839 aa23.93■■□□□ 1.42
VPS28-205ENST00000526204 GRIK5Q16478 980 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 MAPKAPK5Q8IW41 473 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 SLC44A5Q8NCS7 719 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 KBTBD4Q9NVX7 518 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 TNRC6CQ9HCJ0 1690 aaKnown RBP23.92■■□□□ 1.42
VPS28-205ENST00000526204 SMARCA1P28370 1054 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 C16orf86Q6ZW13 317 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 KRT25Q7Z3Z0 450 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 TMEM60Q9H2L4 133 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 LZTFL1Q9NQ48 299 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 ABHD10Q9NUJ1 306 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 GDAQ9Y2T3 454 aa23.92■■□□□ 1.42
VPS28-205ENST00000526204 GPR75-ASB3A0A0A6YYF3 556 aa23.91■■□□□ 1.42
VPS28-205ENST00000526204 BTDP43251 543 aa23.91■■□□□ 1.42
VPS28-205ENST00000526204 CYP26C1Q6V0L0 522 aa23.91■■□□□ 1.42
VPS28-205ENST00000526204 FNBP4Q8N3X1 1017 aaPredicted RBP23.91■■□□□ 1.42
VPS28-205ENST00000526204 RPGRQ92834 1020 aaKnown RBP23.91■■□□□ 1.42
VPS28-205ENST00000526204 EYA3Q99504 573 aa23.91■■□□□ 1.42
VPS28-205ENST00000526204 TAB2Q9NYJ8 693 aa23.91■■□□□ 1.42
VPS28-205ENST00000526204 SAP30BPQ9UHR5 308 aaKnown RBP23.91■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms