RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 ANKRD13CQ8N6S4 541 aa24.22■■□□□ 1.47
CD44-222ENST00000526025 GPRC5AQ8NFJ5 357 aa24.22■■□□□ 1.47
CD44-222ENST00000526025 UPF3BQ9BZI7 483 aaKnown RBP24.22■■□□□ 1.47
CD44-222ENST00000526025 TSKSQ9UJT2 592 aa24.22■■□□□ 1.47
CD44-222ENST00000526025 MYH6P13533 1939 aa24.22■■□□□ 1.47
CD44-222ENST00000526025 NID2Q14112 1375 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 ATP2A1O14983 1001 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 CNMDO75829 334 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 KIF5BP33176 963 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 OAZ1P54368 228 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 ERVK-9P63128 1117 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 ERVK-24P63145 666 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 REPS2Q8NFH8 660 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 ZNF296Q8WUU4 475 aaPredicted RBP24.21■■□□□ 1.47
CD44-222ENST00000526025 TBC1D32Q96NH3 1257 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 SLC38A10Q9HBR0 1119 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 TXNRD2Q9NNW7 524 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 PDRG1Q9NUG6 133 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 MAD2L2Q9UI95 211 aa24.21■■□□□ 1.47
CD44-222ENST00000526025 ISY1Q9ULR0 285 aaKnown RBP24.21■■□□□ 1.47
CD44-222ENST00000526025 FRMPD2Q68DX3 1309 aaPredicted RBP24.2■■□□□ 1.46
CD44-222ENST00000526025 IKQ13123 557 aaPredicted RBP24.2■■□□□ 1.46
CD44-222ENST00000526025 SYDE2Q5VT97 1194 aa24.2■■□□□ 1.46
CD44-222ENST00000526025 CTCFLQ8NI51 663 aaPredicted RBP24.2■■□□□ 1.46
CD44-222ENST00000526025 KIFC2Q96AC6 838 aa24.2■■□□□ 1.46
CD44-222ENST00000526025 ERO1AQ96HE7 468 aa24.2■■□□□ 1.46
CD44-222ENST00000526025 KIF2CQ99661 725 aa24.2■■□□□ 1.46
CD44-222ENST00000526025 GPCPD1Q9NPB8 672 aa24.2■■□□□ 1.46
CD44-222ENST00000526025 PRR12Q9ULL5 1215 aa24.2■■□□□ 1.46
CD44-222ENST00000526025 ZBED4O75132 1171 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 SMARCA1P28370 1054 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 GNAQP50148 359 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 CCNA1P78396 465 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 LACTBP83111 547 aaPredicted RBP24.19■■□□□ 1.46
CD44-222ENST00000526025 PPP2R5BQ15173 497 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 TTBK2Q6IQ55 1244 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 BRF1Q92994 677 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 LZTS2Q9BRK4 669 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 PAGR1Q9BTK6 254 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 PRDM10Q9NQV6 1147 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 BTBD7Q9P203 1132 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 PNMA2Q9UL42 364 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 BRPF3Q9ULD4 1205 aa24.19■■□□□ 1.46
CD44-222ENST00000526025 ZBTB43O43298 467 aa24.18■■□□□ 1.46
CD44-222ENST00000526025 COPB2P35606 906 aa24.18■■□□□ 1.46
CD44-222ENST00000526025 LBX1P52954 281 aa24.18■■□□□ 1.46
CD44-222ENST00000526025 TOB2Q14106 344 aaPredicted RBP24.18■■□□□ 1.46
CD44-222ENST00000526025 ARHGEF6Q15052 776 aa24.18■■□□□ 1.46
CD44-222ENST00000526025 ANKRD1Q15327 319 aa24.18■■□□□ 1.46
CD44-222ENST00000526025 SHCBP1Q8NEM2 672 aa24.18■■□□□ 1.46
CD44-222ENST00000526025 NUP133Q8WUM0 1156 aa24.18■■□□□ 1.46
CD44-222ENST00000526025 RANBP17Q9H2T7 1088 aaKnown RBP24.18■■□□□ 1.46
CD44-222ENST00000526025 ZNF214Q9UL59 606 aaPredicted RBP24.18■■□□□ 1.46
CD44-222ENST00000526025 DOCK3Q8IZD9 2030 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 KLF18A0A0U1RQI7 1052 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 KLRF2D3W0D1 207 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 GNRH1P01148 92 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 GOLGA8HP0CJ92 632 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 KIF22Q14807 665 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 TMEM132BQ14DG7 1078 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 STAG2Q8N3U4 1231 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 FANCBQ8NB91 859 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 MYL10Q9BUA6 226 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 TEX13BQ9BXU2 312 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 SPATC1LQ9H0A9 340 aa24.17■■□□□ 1.46
CD44-222ENST00000526025 RBM28Q9NW13 759 aaKnown RBP24.17■■□□□ 1.46
CD44-222ENST00000526025 SLC25A27O95847 323 aa24.16■■□□□ 1.46
CD44-222ENST00000526025 SLC16A2P36021 539 aa24.16■■□□□ 1.46
CD44-222ENST00000526025 APOBRQ0VD83 1088 aa24.16■■□□□ 1.46
CD44-222ENST00000526025 MICU3Q86XE3 530 aa24.16■■□□□ 1.46
CD44-222ENST00000526025 CHMP4CQ96CF2 233 aa24.16■■□□□ 1.46
CD44-222ENST00000526025 CTDP1Q9Y5B0 961 aaPredicted RBP24.16■■□□□ 1.46
CD44-222ENST00000526025 BAZ2BQ9UIF8 2168 aaKnown RBP24.16■■□□□ 1.46
CD44-222ENST00000526025 ZSWIM8A7E2V4 1837 aa24.15■■□□□ 1.46
CD44-222ENST00000526025 ZNF236Q9UL36 1845 aa24.15■■□□□ 1.46
CD44-222ENST00000526025 MAPK4P31152 587 aa24.15■■□□□ 1.46
CD44-222ENST00000526025 RABEP1Q15276 862 aa24.15■■□□□ 1.46
CD44-222ENST00000526025 Q3C1V9 767 aa24.15■■□□□ 1.46
CD44-222ENST00000526025 SAMD1Q6SPF0 538 aaPredicted RBP24.15■■□□□ 1.46
CD44-222ENST00000526025 RIOX2Q8IUF8 465 aa24.15■■□□□ 1.46
CD44-222ENST00000526025 ZNF274Q96GC6 653 aaPredicted RBP24.15■■□□□ 1.46
CD44-222ENST00000526025 SPZ1Q9BXG8 430 aa24.15■■□□□ 1.46
CD44-222ENST00000526025 RIOX1Q9H6W3 641 aa24.15■■□□□ 1.46
CD44-222ENST00000526025 STAT3P40763 770 aa24.14■■□□□ 1.45
CD44-222ENST00000526025 NEK4P51957 841 aa24.14■■□□□ 1.45
CD44-222ENST00000526025 FCGRTP55899 365 aa24.14■■□□□ 1.45
CD44-222ENST00000526025 ADGRF4Q8IZF3 695 aa24.14■■□□□ 1.45
CD44-222ENST00000526025 MTMR8Q96EF0 704 aa24.14■■□□□ 1.45
CD44-222ENST00000526025 MOV10L1Q9BXT6 1211 aaKnown RBP24.14■■□□□ 1.45
CD44-222ENST00000526025 PLXNB2O15031 1838 aa24.14■■□□□ 1.45
CD44-222ENST00000526025 ZNF536O15090 1300 aa24.13■■□□□ 1.45
CD44-222ENST00000526025 CCDC196A0A1B0GTZ2 297 aa24.13■■□□□ 1.45
CD44-222ENST00000526025 GOLGA8BA8MQT2 603 aa24.13■■□□□ 1.45
CD44-222ENST00000526025 RTN1Q16799 776 aa24.13■■□□□ 1.45
CD44-222ENST00000526025 TKFCQ3LXA3 575 aa24.13■■□□□ 1.45
CD44-222ENST00000526025 TMTC3Q6ZXV5 915 aa24.13■■□□□ 1.45
CD44-222ENST00000526025 DHX30Q7L2E3 1194 aaKnown RBP eCLIP24.13■■□□□ 1.45
CD44-222ENST00000526025 UBA5Q9GZZ9 404 aa24.13■■□□□ 1.45
CD44-222ENST00000526025 MROH8Q9H579 483 aa24.13■■□□□ 1.45
CD44-222ENST00000526025 HPS5Q9UPZ3 1129 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms